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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00047650-protein ID=TCONS_00047650-protein|Name=TCONS_00047650-protein|organism=Clytia hemisphaerica|type=polypeptide|length=269bp
MGTIIKIFRDIPKLNHLARISTSVITPTRVKNEVKRPPSPFALFFQEKWQ
NLKTDNPEMNQNDLMKLASNMWKNSGSYEQQRYRDIFDDKMSTYKQSVKT
PPKRPINSYIRFYMDNLDSLSVIYPNVTDRSKKTAEMWKNLSDFEKAKYK
REYERDLGEFIQNLTDEDKELIQNRRQSLNDQRERRAIKKYGKAAWNEKP
KVGAPNSYIAYIREHSALVPKGENSFVYLSKSWKELSDSEKSVYQEKADQ
LFELEQQKLSEWEAKNVKV Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR009071 | HMG_box_dom |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | PRINTS | PR00886 | HIGHMOBLTY12 | coord: 247..267
score: 24.87
coord: 129..151
score: 41.71
coord: 228..247
score: 29.44 |
| None | No IPR available | CDD | cd01390 | HMGB-UBF_HMG-box | coord: 102..157
e-value: 2.87333E-10
score: 53.7858 |
| None | No IPR available | CDD | cd01390 | HMGB-UBF_HMG-box | coord: 35..99
e-value: 1.09028E-10
score: 54.9414 |
| IPR009071 | High mobility group box domain | SMART | SM00398 | hmgende2 | coord: 101..169
e-value: 1.1E-12
score: 58.1
coord: 200..264
e-value: 0.015
score: 24.5
coord: 33..96
e-value: 2.4E-7
score: 40.4 |
| IPR009071 | High mobility group box domain | GENE3D | 1.10.30.10 | | coord: 21..100
e-value: 2.5E-15
score: 56.0 |
| IPR009071 | High mobility group box domain | GENE3D | 1.10.30.10 | | coord: 197..269
e-value: 4.7E-6
score: 26.3 |
| IPR009071 | High mobility group box domain | PFAM | PF00505 | HMG_box | coord: 34..98
e-value: 4.8E-12
score: 46.0
coord: 102..160
e-value: 1.2E-10
score: 41.6 |
| IPR009071 | High mobility group box domain | GENE3D | 1.10.30.10 | | coord: 101..166
e-value: 2.1E-11
score: 43.6 |
| IPR009071 | High mobility group box domain | PROSITE | PS50118 | HMG_BOX_2 | coord: 102..168
score: 12.417 |
| IPR009071 | High mobility group box domain | PROSITE | PS50118 | HMG_BOX_2 | coord: 34..102
score: 11.432 |
| IPR009071 | High mobility group box domain | SUPERFAMILY | 47095 | HMG-box | coord: 196..265 |
| IPR009071 | High mobility group box domain | SUPERFAMILY | 47095 | HMG-box | coord: 26..97 |
| IPR009071 | High mobility group box domain | SUPERFAMILY | 47095 | HMG-box | coord: 99..166 |
Blast
The following BLAST results are available for this feature:
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