TCONS_00047654-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00047654-protein
Unique NameTCONS_00047654-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length254

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00047654-protein ID=TCONS_00047654-protein|Name=TCONS_00047654-protein|organism=Clytia hemisphaerica|type=polypeptide|length=254bp
MSSIGTGYDLSAHQFSPDGRVFQVEYADKAVSNSSTAVGIRCKDGVIFGV
EKLVTSKLYEPGTGKRIFTIDRHVGMAVAGLISDARQLVSVARDEAAHYR
SVYGGPIPLKYLVDKISGYIHAYTLYSALRPFGCSVFLGSYEKLDGPELY
MIEPSGVSYGYYGCASGKARQNAKTEIEKLQLENLTCKEAVKEVAKIIYV
VHDEVKDKAFELELSWVGAESNGKHQMVPKDIASEAEELAKKAMEEDSDS
DDDL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030348XLOC_030348Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00047654TCONS_00047654Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000426Proteasome_asu_N
IPR029055Ntn_hydrolases_N
IPR001353Proteasome_sua/b
IPR023332Proteasome_alpha-type
Vocabulary: Cellular Component
TermDefinition
GO:0019773proteasome core complex, alpha-subunit complex
GO:0005839proteasome core complex
Vocabulary: Molecular Function
TermDefinition
GO:0004175endopeptidase activity
GO:0004298threonine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006511ubiquitin-dependent protein catabolic process
GO:0051603proteolysis involved in cellular protein catabolic process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051603 proteolysis involved in cellular protein catabolic process
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
cellular_component GO:0005839 proteasome core complex
cellular_component GO:0019773 proteasome core complex, alpha-subunit complex
molecular_function GO:0004175 endopeptidase activity
molecular_function GO:0004298 threonine-type endopeptidase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 170..190
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 227..254
NoneNo IPR availableCDDcd03751proteasome_alpha_type_3coord: 5..217
e-value: 1.48301E-143
score: 403.2
IPR000426Proteasome alpha-subunit, N-terminal domainSMARTSM00948Proteasome_A_N_2coord: 8..30
e-value: 1.5E-7
score: 41.1
IPR000426Proteasome alpha-subunit, N-terminal domainPFAMPF10584Proteasome_A_Ncoord: 8..30
e-value: 2.4E-10
score: 39.8
IPR029055Nucleophile aminohydrolases, N-terminalGENE3D3.60.20.10coord: 4..246
e-value: 5.7E-74
score: 247.9
IPR029055Nucleophile aminohydrolases, N-terminalSUPERFAMILY56235N-terminal nucleophile aminohydrolases (Ntn hydrolases)coord: 3..245
IPR001353Proteasome, subunit alpha/betaPFAMPF00227Proteasomecoord: 31..217
e-value: 9.9E-52
score: 175.1
IPR023332Proteasome alpha-type subunitPROSITEPS51475PROTEASOME_ALPHA_2coord: 23..237
score: 74.726

Blast
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BLAST of TCONS_00047654-protein vs. Swiss-Prot (Human)
Match: PSA3 (Proteasome subunit alpha type-3 OS=Homo sapiens GN=PSMA3 PE=1 SV=2)

HSP 1 Score: 392.889 bits (1008), Expect = 5.695e-140
Identity = 182/253 (71.94%), Postives = 221/253 (87.35%), Query Frame = 0 
Query:    1 MSSIGTGYDLSAHQFSPDGRVFQVEYADKAVSNSSTAVGIRCKDGVIFGVEKLVTSKLYEPGTGKRIFTIDRHVGMAVAGLISDARQLVSVARDEAAHYRSVYGGPIPLKYLVDKISGYIHAYTLYSALRPFGCSVFLGSYEKLDGPELYMIEPSGVSYGYYGCASGKARQNAKTEIEKLQLENLTCKEAVKEVAKIIYVVHDEVKDKAFELELSWVGAESNGKHQMVPKDIASEAEELAKKAMEEDSDSDDD 253
            MSSIGTGYDLSA  FSPDGRVFQVEYA KAV NSSTA+GIRCKDGV+FGVEKLV SKLYE G+ KR+F +DRHVGMAVAGL++DAR L  +AR+EA+++RS +G  IPLK+L D+++ Y+HAYTLYSA+RPFGCS  LGSY   DG +LYMI+PSGVSYGY+GCA GKARQ AKTEIEKLQ++ +TC++ VKEVAKIIY+VHDEVKDKAFELELSWVG  +NG+H++VPKDI  EAE+ AK++++E+ +SDDD
Sbjct:    1 MSSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEKYAKESLKEEDESDDD 253
The following BLAST results are available for this feature:
BLAST of TCONS_00047654-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PSA35.695e-14071.94Proteasome subunit alpha type-3 OS=Homo sapiens GN... [more]
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