TCONS_00047667-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00047667-protein
Unique Name	TCONS_00047667-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	361

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00047667-protein ID=TCONS_00047667-protein|Name=TCONS_00047667-protein|organism=Clytia hemisphaerica|type=polypeptide|length=361bp
LVFAVLFNHCAFMSMTNNQYLLELNEEDTSMQQRGNRRNKGKQPPQQQQF
YQPSQQQNSYTPELFDDMSAYNQQPQQTTPPSSMMQPNQPMQPAQMTFPG
QELLQDPNMANMATNMAMQYGQQFMPAGKEFVEKKLDHFLSVSKLKYYFA
VDTTYVLKKLGLLVFPFAHKDWSLKYDNAEPVAPRFEINAPDLYIPSMAF
VTYVLVCSVILGTQNRFTPEQLGMTASSAFVWLCIELIVIVMIMYLIGIS
GNIKYLDILSFCGYKYVGMILTSVCGLLFETTGYYASLLWCSVAISFFIA
RSLRLVINPEDHSDSVSRSTSGNKRRLYILLTVSLIQPVFMYFLTKHLIH
YTPPKIMKMSG

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_030354	XLOC_030354	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00047667	TCONS_00047667	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005578	Yif1_fam

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005578	Yif1 family	PFAM	PF03878	YIF1	coord: 112..345 e-value: 1.9E-84 score: 282.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..95

Blast

[Close]

BLAST of TCONS_00047667-protein vs. Swiss-Prot (Human)
Match: YIF1B (Protein YIF1B OS=Homo sapiens GN=YIF1B PE=1 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 3.124e-89
Identity = 135/299 (45.15%), Postives = 189/299 (63.21%), Query Frame = 0

Query:   53 PSQQQNSYTP-ELFDDMSAYNQQPQQTTPPSSMMQPNQPMQPAQMTFPGQELLQDPNMANMATNMAMQYGQQFMPAGKEFVEKKLDHFLSVSKLKYYFAVDTTYVLKKLGLLVFPFAHKDWSLKYDNAEPVAPRFEINAPDLYIPSMAFVTYVLVCSVILGTQNRFTPEQLGMTASSAFVWLCIELIVIVMIMYLIGISGNIKYLDILSFCGYKYVGMILTSVCGLLFETTGYYASLLWCSVAISFFIARSLRLVINPEDHSDSVSRSTSGNKRRLYILLTVSLIQPVFMYFLTKHLIH 350
            P  Q     P +LFDD S+      Q+    +   P     PA    P    L DP      +NMAM YG      GKE V+K +D F+ ++KLKYYFAVDT YV +KLGLL FP+ H+DW ++Y    PVAPRF++NAPDLYIP+MAF+TYVLV  + LGTQ+RF+P+ LG+ ASSA  WL +E++ I++ +YL+ ++ ++  +D+++F GYKYVGMI   + GLLF   GYY  L WC VAI  F+ R+LRL I  +  ++ V    + N+ R+Y+ + V+  QP+ MY+LT HL+ 
Sbjct:   26 PVSQPGMADPHQLFDDTSS-----AQSRGYGAQRAPGGLSYPAASPTPHAAFLADP-----VSNMAMAYGSSLAAQGKELVDKNIDRFIPITKLKYYFAVDTMYVGRKLGLLFFPYLHQDWEVQYQQDTPVAPRFDVNAPDLYIPAMAFITYVLVAGLALGTQDRFSPDLLGLQASSALAWLTLEVLAILLSLYLVTVNTDLTTIDLVAFLGYKYVGMIGGVLMGLLFGKIGYYLVLGWCCVAIFVFMIRTLRLKILADAAAEGVPVRGARNQLRMYLTMAVAAAQPMLMYWLTFHLVR 314

The following BLAST results are available for this feature:

BLAST of TCONS_00047667-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00047667-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
YIF1B	3.124e-89	45.15	Protein YIF1B OS=Homo sapiens GN=YIF1B PE=1 SV=1	[more]

You are here

TCONS_00047667-protein (polypeptide) - C. hemisphaerica