TCONS_00047675-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00047675-protein
Unique Name	TCONS_00047675-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	309

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00047675-protein ID=TCONS_00047675-protein|Name=TCONS_00047675-protein|organism=Clytia hemisphaerica|type=polypeptide|length=309bp
MDYYITCNGRILQGDETPNNMGTIRIHPRLVGGKGGFGSMLRAIGARIEK
TTNHEACRDLNGRRMRDVNNEKKITEWLQEQDTKEKERIQKHNDRIERTL
NPKMRYEDKDYTKSIQGNVDKVNEAVKIATTVNKNKPGEKRKTTEQVSNS
KKSKMWLGLDELDSDVDSEVSESDPEDGEITNKLAKEPKTDQQTKKQEES
SGDPVTTAIESDKDKVPEEKKYVENKEESSPKQNEEVQKKATGPEYLCLD
EYKDAEELQSVGLERLKSALMFHGMKCGGTLQQRAQRLFLTKGKKSLKDL
DPSLFAKKK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_030358	XLOC_030358	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00047675	TCONS_00047675	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR024974	Sde2_N

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024974	Sde2 N-terminal domain	PFAM	PF13019	Telomere_Sde2	coord: 16..98 e-value: 8.1E-23 score: 80.9
None	No IPR available	PFAM	PF13297	Telomere_Sde2_2	coord: 249..307 e-value: 1.9E-24 score: 85.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..243

Blast

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BLAST of TCONS_00047675-protein vs. Swiss-Prot (Human)
Match: SDE2 (Protein SDE2 homolog OS=Homo sapiens GN=SDE2 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.583e-36
Identity = 66/177 (37.29%), Postives = 109/177 (61.58%), Query Frame = 0

Query:    2 DYYITCNGRILQGDETPNNMGTIRIHPRLVGGKGGFGSMLRAIGARIEKTTNHEACRDLNGRRMRDVNNEKKITEWLQEQDTKEKERIQKHNDRIERTL-NPKMRYEDKDYTKSIQGNVDKVNEAV----------KIATTVNKNKPGE---KRKTTEQVSNSKKSKMWLGLDELDS 164
            ++++ CNG ++   +T  +     + PRL GGKGGFGSMLRA+GA+IEKTTN EACRDL+GRR+RDVN+EK + EW+++Q  +E E+ QK  +R++R L  PK  +   DY +      +++ ++V           ++  +++N+  +   K +T    S  K+   WLG++ L++
Sbjct:   46 NFFVKCNGALINTSDTVQHGAVYSLEPRLCGGKGGFGSMLRALGAQIEKTTNREACRDLSGRRLRDVNHEKAMAEWVKQQAEREAEKEQKRLERLQRKLVEPKHCFTSPDYQQQCHEMAERLEDSVLKGMQAASSKMVSAEISENRKRQWPTKSQTDRGASAGKRRCFWLGMEGLET 222

The following BLAST results are available for this feature:

BLAST of TCONS_00047675-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00047675-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SDE2	1.583e-36	37.29	Protein SDE2 homolog OS=Homo sapiens GN=SDE2 PE=1 ...	[more]

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TCONS_00047675-protein (polypeptide) - C. hemisphaerica