TCONS_00047695-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00047695-protein
Unique Name	TCONS_00047695-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	478

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00047695-protein ID=TCONS_00047695-protein|Name=TCONS_00047695-protein|organism=Clytia hemisphaerica|type=polypeptide|length=478bp
SGKEKMGRKKKKQFIDKKSAHKFTLVHRSQRDPLQADDEVGEHVLLPVDQ
TNDSGEKNQNEENVKYGITYDDDYDYMQHLRPRGEGMLILADTPSKPSEI
IVKDEEDREDVSFGNLKLPSDAFASAQEEDIGMLNKGVLPRGPQPDWDPD
IVQALDEDVDFDDPDNFLDDDFIMKANADGGLIKDGCDLSEGLFSERRAG
YQETGNEDDETDSENESYFSSDNLMSDDEDPFANEETKSRFTNYSMTSSV
IRRTEGLKVLDDRFERIMEEYDEEAIGCVDQEEVQGVFNVNNDLVNNVIE
DFYESNKKHDLSKTKDGDDENLIEENDAESEEEDEQKIFEQFMTKPKEKW
DCESIISTYSNIYNHPKLIAEESTKKYQLHKRTGIPIGVFAESAKKVEDD
DVDEEDVDTEMMETVELNNVRNKDETPEQRKQRKKDVKEQRKNRRIEKKS
NKIAFKSEQKKQEKIVSNTIAQRGNFKL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_030374	XLOC_030374	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00047695	TCONS_00047695	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007307	LTV

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007307	Low temperature viability protein	PFAM	PF04180	LTV	coord: 16..448 e-value: 2.6E-65 score: 221.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 415..478
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 309..334
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 201..230

Blast

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BLAST of TCONS_00047695-protein vs. Swiss-Prot (Human)
Match: LTV1 (Protein LTV1 homolog OS=Homo sapiens GN=LTV1 PE=1 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 3.735e-86
Identity = 193/493 (39.15%), Postives = 284/493 (57.61%), Query Frame = 0

Query:   20 AHKFTLVHRSQRDPLQADDEVGEHVLLPVDQTNDSGEKNQNEENVKYGITYDDDYDYMQHLR-PRGEGMLILADTPSKPSEIIVKDEEDREDVSFGN--LKLPSDAFASAQEEDIGMLNKGVLPRGPQPDWDPDIVQALDEDVDFDDPDNFLDDDFIMKANADGGLIKDGCDLSEGLFSERRAGYQETGNE--------DDETDSENESYFSSDNLMSDD--------------EDPFANEETKSRFTNYSMTSSVIRRTEGLKVLDDRFERIMEEYDEEAIGCVDQEEVQGVFNVNNDLVNNVIEDFYESNKKHDLSKTKDGDDENLIEENDAESEEEDE-----------QKIFEQFMTKPKEKWDCESIISTYSNIYNHPKLIA-EESTKKYQLHKRTGIPIGVFAE---SAKKVEDDDVDEEDVDTEMMETVELNNV----RNKDETPEQRKQRKKDVKEQRKNRRIEKKSNKIAFKSEQKKQEKIVSN 468
            A  F LVHRSQRDPL AD+   + VLLP  + ++   + +  E  KYG+ +DDDYDY+QHL+ P G   LI + T S  +    + EE  E +   +  +KLPS  FAS  EED+G+LNK     GP+ D+DPDIV ALD+D DFDDPDN L+DDFI++AN   G  ++G D+            Q++ NE        DDE    N+ Y S+  L+SD+              +  F +EETKSRFT YSMTSSV+RR E L + D+RFE+  E+YD++ IG +D  E++G   V+++ +  V+ D+Y+               EN ++ N  E  E+ +           +++    + + KEKWDCESI STYSN+YNHP+LI  +   K+ ++  +TGIP+ V  +   +AK+ E           +M+   +L  V    R+K+E+ E ++ RK+ +KE+RK RR+EKK+NK+AFK E+++QEK + N
Sbjct:   15 AVSFHLVHRSQRDPLAADESAPQRVLLPTQKIDN---EERRAEQRKYGVFFDDDYDYLQHLKEPSGPSELIPSSTFSAHN----RREEKEETLVIPSTGIKLPSSVFASEFEEDVGLLNKAAPVSGPRLDFDPDIVAALDDDFDFDDPDNLLEDDFILQANKATGE-EEGMDI------------QKSENEDDSEWEDVDDEKGDSNDDYDSA-GLLSDEDCMSVPGKTHRAIADHLFWSEETKSRFTEYSMTSSVMRRNEQLTLHDERFEKFYEQYDDDEIGALDNAELEGSIQVDSNRLQEVLNDYYKEKA------------ENCVKLNTLEPLEDQDLPMNELDESEEEEMITVVLEEAKEKWDCESICSTYSNLYNHPQLIKYQPKPKQIRISSKTGIPLNVLPKKGLTAKQTE---------RIQMINGSDLPKVSTQPRSKNESKEDKRARKQAIKEERKERRVEKKANKLAFKLEKRRQEKELLN 465

The following BLAST results are available for this feature:

BLAST of TCONS_00047695-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00047695-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
LTV1	3.735e-86	39.15	Protein LTV1 homolog OS=Homo sapiens GN=LTV1 PE=1 ...	[more]

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TCONS_00047695-protein (polypeptide) - C. hemisphaerica