TCONS_00047705-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00047705-protein
Unique NameTCONS_00047705-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length522

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00047705-protein ID=TCONS_00047705-protein|Name=TCONS_00047705-protein|organism=Clytia hemisphaerica|type=polypeptide|length=522bp
LPSNCRMLVSLSPNDEALVSIKDEFKGSSFIEVGGLQPKACKSLINKWLS
CSKRKLTDEQYGILSECYRKSPTPLFLRFCFDQATKWKSYHDIEDCSLES
NIKDSIDRIFSDLEKVHGQTLVSHTIGLIRASRHGLSDSEIEDLLSIDDE
VLNDIYQQWSPPMRRVSSFTWIQIRNALGFCLTRKNVNGIVLNTFSHSQI
QDAASERYHKDADDLETFRELLVDYFMGTWSNGVCKPTSGAKGAGEPQGK
DRLVASQPNRFKHENSPGEHYNYRKLSELPFHLMKLKDVEKIKDNLLFNF
DFLVATMQALGVQALLNTVSEASKLFSNDEDISYLYSILTSALPVLEKFP
DQLACQIAGRVDEEAPKSGIIGMLERIKESDQPYFIPTKKCFQTEEVVST
PEGFKGHTDAINDVVVLDNGKKLLTVSEDKSLRIWKVDNSSEIQMNEFED
PIINVFPYQNDEKAILLFKSKLLAVNLSDFETIYEESFQGERIGALTPDG
SRFVMLCTEKKNYRVAIYDVSM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030383XLOC_030383Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00047705TCONS_00047705Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 394..436
e-value: 8.2E-6
score: 35.3
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 404..445
score: 14.084
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 326..522
e-value: 9.7E-10
score: 37.3
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 404..445
score: 12.974
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 399..520

Blast
[Close]
BLAST of TCONS_00047705-protein vs. Swiss-Prot (Human)
Match: NWD1 (NACHT domain- and WD repeat-containing protein 1 OS=Homo sapiens GN=NWD1 PE=1 SV=3)

HSP 1 Score: 171.014 bits (432), Expect = 2.304e-45
Identity = 110/331 (33.23%), Postives = 176/331 (53.17%), Query Frame = 0 
Query:    1 LPSNC--RMLVSLSPNDEALVSIKDEFK-----GSSFIEVGGLQPKACKSLINKWLSCSKRKL----TDEQYGILSECYRKSPTPLFLRFCFDQATKWKSYHDIEDCSLESNIKDSIDRIFSDLEKVHGQTLVSHTIGLIRASRHGLSDSEIEDLLSIDDEVLNDIYQQWSPP---MRRVSSFTWIQIRNALGFCLTRKNVNGIVLNTFSHSQIQDAASERYHKDADDLETFRELLVDYFMGTWSNGVCKPTSGAKGAGEPQGKDRLVASQPNRFKHENSPGEHYNYRKLSELPFHLMKLKDVEKIKDNLLFNFDFLVATMQALGVQALLN 317
            LP NC  R+ + LS    AL  + D  +       ++ EV  L     + +I   L+ ++R L    TD  +  L EC      P  LR  F++A KW S+       L +  +++  ++ + LE+ HGQ LV+H +G I +SRHGLS++E++D+LS+DDEVL D+Y+ W+PP   + R     W+++R  LG+ L R+ V+G  L   +H Q+ +   ERY   ++  +    +L D+F GTWS G  K  +     G+P   DR VA QP  F H  +     N RKL ELP+HL+    +E++K  +L +  ++     + G++ LL+
Sbjct:  454 LPLNCPPRVHLILSACSGAL-GVLDTLQRVLLDPEAYWEVKPLSGNQGQQMIQLLLAAARRTLSPVHTDLLWASLPEC----GNPGRLRLAFEEARKWASF--TVPVPLATTAEEATHQLCTRLEQTHGQLLVAHVLGYIVSSRHGLSEAELKDVLSLDDEVLQDVYRDWTPPSKELLRFPPLLWVRLRRDLGYYLARRPVDGFTLLAIAHRQLVEVVRERYLSGSERAKR-HGVLADFFSGTWSQGTKKLIT-LPLVGKPLNLDRKVAPQPLWFSHTVA-----NLRKLKELPYHLLHSGRLEELKQEVLGSMSWISCRGISGGIEDLLD 770
The following BLAST results are available for this feature:
BLAST of TCONS_00047705-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NWD12.304e-4533.23NACHT domain- and WD repeat-containing protein 1 O... [more]
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