TCONS_00048825-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00048825-protein
Unique Name	TCONS_00048825-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	460

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00048825-protein ID=TCONS_00048825-protein|Name=TCONS_00048825-protein|organism=Clytia hemisphaerica|type=polypeptide|length=460bp
MAAPPDILQLSKSQVHSFEKFCCIYEALNGQKIESQIQTVQLTTNCFKSN
FTPMVRWNQIFYLMYKSNMTYNEDKCMSMCREEANTISYFYHVAYILMFI
LTVSSNLLVIFAILKTTKLRSTIANLFILSLAFSDLFVGLFIIPIKIKKS
LNNMHFCLNDEWCRFYITTDNVFFSISITNLLVIAIDRYIALHYTYAYPR
ILTRTRAKIVIAALWFYGIIWGFLANIPWDDSGNDAITINRGSCVLENSY
YIYSVFVLVFSIPVIVMGVIYIRIFLIARHHANDIVNSTSLSHNNNSKQN
GDTHHGDISLIKEKKPKRRSILKGIRSSFTSGFTRRHDSAQYYKMIFKAS
KTVATVYGTFVVSWAPVCIISVTLHACVECFGAEPTESGHKWYTVVFVNF
LPILASMANPFIYAILSKQYRRAFKKILLGVYPKSFRWMREQSNSSSKAS
KKSYAESVLL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_031037	XLOC_031037	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00048825	TCONS_00048825	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000276	GPCR_Rhodpsn
IPR017452	GPCR_Rhodpsn_7TM

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000276	G protein-coupled receptor, rhodopsin-like	PRINTS	PR00237	GPCRRHODOPSN	coord: 90..114 score: 25.17 coord: 252..275 score: 25.78 coord: 170..192 score: 34.2 coord: 124..145 score: 35.2 coord: 395..421 score: 28.34 coord: 206..227 score: 19.67 coord: 349..373 score: 24.29
IPR000276	G protein-coupled receptor, rhodopsin-like	SMART	SM01381	7TM_GPCR_Srsx_2	coord: 99..428 e-value: 1.3E-4 score: -41.4
IPR000276	G protein-coupled receptor, rhodopsin-like	PFAM	PF00001	7tm_1	coord: 106..413 e-value: 1.3E-44 score: 152.4
IPR000276	G protein-coupled receptor, rhodopsin-like	PROSITE	PS00237	G_PROTEIN_RECEP_F1_1	coord: 176..192
None	No IPR available	GENE3D	1.20.1070.10		coord: 57..457 e-value: 4.8E-70 score: 235.6
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 59..283 coord: 335..448
IPR017452	GPCR, rhodopsin-like, 7TM	PROSITE	PS50262	G_PROTEIN_RECEP_F1_2	coord: 105..413 score: 35.176

Blast

[Close]

BLAST of TCONS_00048825-protein vs. Swiss-Prot (Human)
Match: ADRB2 (Beta-2 adrenergic receptor OS=Homo sapiens GN=ADRB2 PE=1 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 4.645e-26
Identity = 102/373 (27.35%), Postives = 173/373 (46.38%), Query Frame = 0

Query:   64 MYKSNMTYNEDKCMSMCREEANTISYFYHVAYILMFILTVSSNLLVIFAILKTTKLRSTIANLFILSLAFSDLFVGLFIIPIKIKKSLNNMHFCLNDEWCRFYITTDNVFFSISITNLLVIAIDRYIALHYTYAYPRILTRTRAKIVIAALWFYGIIWGFLA-NIPW-DDSGNDAITI--NRGSC-VLENSYYIYSVFVLVFSIPVIVMGVIYIRIFLIARHHANDIVNSTSLSHNNN---SKQNGDTHHGDISLIKEKKPKRRSILKGIRSSFTSGFTRRHDSAQYYKMIFKASKTVATVYGTFVVSWAPVCIISVTLHACVECFGAEPTESGHKWYTVVFVNFLPILASMANPFIYAILSKQYRRAFKKIL 428
            +   N ++  D  ++  R+E   +     ++ I++ I  V  N+LVI AI K  +L+ T+ N FI SLA +DL +GL ++P      L  M +   + WC F+ + D +  + SI  L VIA+DRY A+   + Y  +LT+ +A+++I  +W    +  FL   + W   +  +AI    N   C    N  Y  +  ++ F +P+++M  +Y R+F  A+     I  S    H  N    +Q+G T HG           RRS      S F     + H          KA KT+  + GTF + W P  I+++ +H           ++  +    + +N++  + S  NP IY   S  +R AF+++L
Sbjct:   11 LLAPNGSHAPDHDVTQERDEVWVVGMGIVMSLIVLAI--VFGNVLVITAIAKFERLQ-TVTNYFITSLACADLVMGLAVVPFGAAHILMKM-WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYANETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHG----------LRRS------SKFC---LKEH----------KALKTLGIIMGTFTLCWLPFFIVNI-VHVI--------QDNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELL 340

The following BLAST results are available for this feature:

BLAST of TCONS_00048825-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00048825-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ADRB2	4.645e-26	27.35	Beta-2 adrenergic receptor OS=Homo sapiens GN=ADRB...	[more]

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TCONS_00048825-protein (polypeptide) - C. hemisphaerica