TCONS_00048919-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00048919-protein
Unique Name	TCONS_00048919-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	685

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00048919-protein ID=TCONS_00048919-protein|Name=TCONS_00048919-protein|organism=Clytia hemisphaerica|type=polypeptide|length=685bp
MKWFFFLFGVWNXCLRGNMKRFFLLFGVWNLVVISQPKSMNLTSSCEFAK
KTYRDAGYKDEDIFTTEQEGSLLECGLKRTCCMKKAEENLLSSSEKARIG
LSNPLHKLKDMFQGKRVEFKDNYQIMMNVSQSNLHSMFENTYKSHYTNNA
YIIDDLYKSLRQYINGGELDLRVKFNTFFGNLHEKVYVMVNPGKTFDAKY
RNCIRDNTNSVKPFGDKQNTISTQMTRAFEASRVFLQGLKEGMDVSLKLL
DSPVHEKCKLAFMKMSKCSICYGLNPNGKPCANYCLNVMKGCYAYTMMFQ
PRWNTYIHAMTELVAKLKGPFNMEVFVVPLGVQISGAIMTFQENIQNVTR
KVEAVCGQPAANKNFLNGDANSRSRRDTAAADQAKKSLDRLKVSSEQVVS
SGTDFQKQTQAIIDSLKNDRFIPRFMMGKEEDIKATAYEKLLAETKKKLR
DLEDYWYLLPNQICSAGIASQNNTNCWNGQNTNGYTKPVVKGNLKDLFNS
NPEMDLTSKSKEYDSGVLTLDAKLQDIIKQIDSVMGGNGIVQPDTEASGS
GSGDDSSGDNDNEGSGERPATTEEPEEGSATGSGDGKNGGGENKTKPPVR
VTTESNSVVTDAPTIPTCHPNDANCLPDENNIGPNGVNAAAPPEIPPWQS
RNKQTQENPSNASTTLTTNFSFISTLVVLIVYWIW

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_031075	XLOC_031075	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00048919	TCONS_00048919	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001863	Glypican

Vocabulary: **Molecular Function**
Term	Definition
GO:0043395	heparan sulfate proteoglycan binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005578	proteinaceous extracellular matrix
GO:0016020	membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
cellular_component	GO:0005578	proteinaceous extracellular matrix
molecular_function	GO:0043395	heparan sulfate proteoglycan binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 435..455
IPR001863	Glypican	PFAM	PF01153	Glypican	coord: 429..592 e-value: 1.0E-19 score: 70.7 coord: 35..418 e-value: 1.8E-84 score: 284.5

Blast

[Close]

BLAST of TCONS_00048919-protein vs. Swiss-Prot (Human)
Match: GPC6 (Glypican-6 OS=Homo sapiens GN=GPC6 PE=1 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 5.223e-66
Identity = 145/470 (30.85%), Postives = 222/470 (47.23%), Query Frame = 0

Query:   45 SCEFAKKTYRDAGYKDEDIFTTEQEGSLLE-CGLKRTCCMKKAEENLLSSSEKARIGLSNPL----HKLKDMFQGKRVEFKDNYQIMMNVSQSNLHSMFENTYKSHYTNNAYIIDDLYKSLRQYINGGELDLRVKFNTFFGNLHEKVYVMVNPGKTFDAKYRNCIRDNTNSVKPFGDKQNTISTQMTRAFEASRVFLQGLKEGMDVSLKLLDSPVHEKCKLAFMKMSKCSICYGLNPNGKPCANYCLNVMKGCYAYTMMFQPRWNTYIHAMTELVAKLKGPFNMEVFVVPLGVQISGAIMTFQENIQNVTRKVEAVCGQPAANKNFLNGDANSRSRRDTAAADQAKKSLDRLKVSSEQVVSSGTDFQKQTQAIIDSLKNDRFIPRFMMGKEEDIKATAYEKLLAETKKKLRDLEDYWYLLPNQIC---SAGIASQNNTNCWNGQNTNGYTKPVVKGNLKDLFNSNPEMDL 506
            SC   ++ Y   G+   DI   E  G  L  C  + TCC  + E+ L   S+++++   N +    H ++  F  +  +F + ++ ++  ++ +L+ MF  TY   Y  N+ +  DL+  L++Y  GG ++L    N F+  L E+++ ++NP   F   Y  C+   T+ +KPFGD    +  Q+TRAF A+R F+QGL  G +V+ ++        C  A MKM  C  C GL P  +PC NYCLNVMKGC A        WN +I AM  +  +L+GPFN+E  + P+ V+IS AIM  QEN   V+ KV   CGQP             RS R                       S+  +F            N RF P     +      T+ ++L+ + K+KL+  +  W  LP  IC   S    + N   CWNG +   Y   ++   L +  N NPE+D+
Sbjct:   29 SCGEVRQAYGAKGFSLADIPYQEIAGEHLRICPQEYTCCTTEMEDKL---SQQSKLEFENLVEETSHFVRTTFVSRHKKFDEFFRELLENAEKSLNDMFVRTYGMLYMQNSEVFQDLFTELKRYYTGGNVNLEEMLNDFWARLLERMFQLINPQYHFSEDYLECVSKYTDQLKPFGDVPRKLKIQVTRAFIAARTFVQGLTVGREVANRVSKVSPTPGCIRALMKMLYCPYCRGL-PTVRPCNNYCLNVMKGCLANQADLDTEWNLFIDAMLLVAERLEGPFNIESVMDPIDVKISEAIMNMQENSMQVSAKVFQGCGQPKPAPAL-------RSAR-----------------------SAPENF------------NTRFRPYNPEERPTTAAGTSLDRLVTDIKEKLKLSKKVWSALPYTICKDESVTAGTSNEEECWNGHSKARYLPEIMNDGLTNQIN-NPEVDV 451

The following BLAST results are available for this feature:

BLAST of TCONS_00048919-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00048919-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GPC6	5.223e-66	30.85	Glypican-6 OS=Homo sapiens GN=GPC6 PE=1 SV=1	[more]

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TCONS_00048919-protein (polypeptide) - C. hemisphaerica