TCONS_00048992-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00048992-protein
Unique NameTCONS_00048992-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length113

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00048992-protein ID=TCONS_00048992-protein|Name=TCONS_00048992-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
MADEQKAQYTGCEGPDSMYVKLISSDGLEFIVKREHALTSGTIKAMLSGP
GQFEENDTNEVSFREIPSHVLEKVCTYFSYKVRYTNSSSEIPEFQIQPDI
ALELLMAANFLDC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031118XLOC_031118Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00048992TCONS_00048992Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001232SKP1-like
IPR016073Skp1_comp_POZ
IPR011333SKP1/BTB/POZ
Vocabulary: Biological Process
TermDefinition
GO:0006511ubiquitin-dependent protein catabolic process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001232S-phase kinase-associated protein 1-likeSMARTSM00512skp1_3coord: 17..113
e-value: 2.6E-32
score: 123.3
IPR016073SKP1 component, POZ domainPFAMPF03931Skp1_POZcoord: 19..81
e-value: 7.6E-11
score: 41.9
NoneNo IPR availableGENE3D3.30.710.10coord: 17..113
e-value: 3.8E-31
score: 107.2
IPR011333SKP1/BTB/POZ domainSUPERFAMILY54695POZ domaincoord: 15..113

Blast
[Close]
BLAST of TCONS_00048992-protein vs. Swiss-Prot (Human)
Match: ELOC (Elongin-C OS=Homo sapiens GN=ELOC PE=1 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 1.319e-67
Identity = 93/111 (83.78%), Postives = 101/111 (90.99%), Query Frame = 0 
Query:    3 DEQKAQYTGCEGPDSMYVKLISSDGLEFIVKREHALTSGTIKAMLSGPGQFEENDTNEVSFREIPSHVLEKVCTYFSYKVRYTNSSSEIPEFQIQPDIALELLMAANFLDC 113
            D ++  Y GCEGPD+MYVKLISSDG EFIVKREHALTSGTIKAMLSGPGQF EN+TNEV+FREIPSHVL KVC YF+YKVRYTNSS+EIPEF I P+IALELLMAANFLDC
Sbjct:    2 DGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112
The following BLAST results are available for this feature:
BLAST of TCONS_00048992-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ELOC1.319e-6783.78Elongin-C OS=Homo sapiens GN=ELOC PE=1 SV=1[more]
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