TCONS_00049198-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00049198-protein
Unique NameTCONS_00049198-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length257

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00049198-protein ID=TCONS_00049198-protein|Name=TCONS_00049198-protein|organism=Clytia hemisphaerica|type=polypeptide|length=257bp
MGPRLSDLLQQDRYVLPEVQRDYQHQNVSTPFYPSVLAPKNNKKDNVDLS
TSELTKFPDLSGRHSIRCLNLNNNYLKTLSHELSSLDKLKELRLQHNRMV
YLHPAIWSLSQLETLDLSLNAIATLPNEIGCLKCLKKLHLGYNKLYKLPE
DIKLLENLIELNLEGNRFIEMPLSLVYIKRLQKLNLNNNKISYLPKETTR
LQSLQELHLLHNPVSKIHVKAIDYLLQLQVFEFGTLQNGENKITNPNGRR
LVLPSKP
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031241XLOC_031241Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00049198TCONS_00049198Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675L_dom-like
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 86..108
e-value: 35.0
score: 8.8
coord: 132..154
e-value: 14.0
score: 12.0
coord: 178..200
e-value: 19.0
score: 11.0
coord: 109..131
e-value: 0.76
score: 18.8
coord: 155..175
e-value: 220.0
score: 2.3
coord: 201..224
e-value: 48.0
score: 7.7
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 164..246
e-value: 1.8E-12
score: 46.2
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 7..109
e-value: 2.0E-11
score: 42.8
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 110..163
e-value: 5.6E-13
score: 48.1
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 42..233
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 157..178
score: 5.317
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 65..87
score: 6.634
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 203..224
score: 5.348
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 88..110
score: 5.14
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 180..201
score: 7.589
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 134..155
score: 7.381
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 111..132
score: 7.966

Blast
[Close]
BLAST of TCONS_00049198-protein vs. Swiss-Prot (Human)
Match: SHOC2 (Leucine-rich repeat protein SHOC-2 OS=Homo sapiens GN=SHOC2 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.808e-19
Identity = 64/151 (42.38%), Postives = 88/151 (58.28%), Query Frame = 0 
Query:   47 VDLSTSELTKFP-DLSGRHSIRCLNLNNNYLKTLSHELSSLDKLKELRLQHNRMVYLHPAIWSLSQLETLDLSLNAIATLPNEIGCLKCLKKLHLGYNKLYKLPEDIKLLENLIELNLEGN-RFIEMPLSLVYIKRLQKLNLNNNKISYLP 195
            ++L+T++LTK P D+SG  S+  L L+NN LK L H L +L KL+EL L+ N++  L   I  L  L+ L L+ N + TLP  IG L  L  L LG N L  LPE+I  LENL EL L  N     +P  L    +L  +++ N  +S+LP
Sbjct:  407 LNLATNQLTKIPEDVSGLVSLEVLILSNNLLKKLPHGLGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLTNNQLTTLPRGIGHLTNLTHLGLGENLLTHLPEEIGTLENLEELYLNDNPNLHSLPFELALCSKLSIMSIENCPLSHLP 557
The following BLAST results are available for this feature:
BLAST of TCONS_00049198-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SHOC21.808e-1942.38Leucine-rich repeat protein SHOC-2 OS=Homo sapiens... [more]
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