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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00049349-protein ID=TCONS_00049349-protein|Name=TCONS_00049349-protein|organism=Clytia hemisphaerica|type=polypeptide|length=432bp
MERIDNDSSVTKSGSSDQNLNNTLCAICGQYINLLSKNPGEYCKCEECDA
FFVTQNDRSMHQQKGIRYKCGACQKLFACKSAVRIHTPTHKTSPTNVNLS
VSNSGVCFECKDCGVSFTTKHSLAIHQNNGIEYQCTVCQKLFACKSAVLI
HAQTHSLFHHHVESKETLSYNQTSPKFDADQCGVCKKSFSSEHRLRHHLK
THSKVLTSCDKCGKGFSLEEFLDHNKNCSKKKFVLKCKICERFFFELSAL
NKHMNIHTKPFSCSKCARSFARKKALERHQRTRKCLFKCKECEKNFSNTD
DFIKHKRTHYKFECKDCGKLYNSKRNLLDHENSHKGIKAYPCETCGKSFS
TSGSLATHKKMHGPLLFNCEECGKCFAHKHSLERHVFLHKDIKSFKCETC
GKGFKSKTNLNGHNKTVKCKSKEGNHAVWLLI Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR013087 | Zinc finger C2H2-type | SMART | SM00355 | c2h2final6 | coord: 287..309
e-value: 0.0041
score: 26.3
coord: 108..128
e-value: 20.0
score: 10.6
coord: 340..362
e-value: 4.4E-4
score: 29.6
coord: 68..90
e-value: 8.6
score: 13.9
coord: 261..281
e-value: 9.7
score: 13.4
coord: 235..257
e-value: 0.012
score: 24.8
coord: 133..155
e-value: 0.13
score: 21.3
coord: 312..334
e-value: 0.031
score: 23.4
coord: 180..202
e-value: 2.6
score: 17.1
coord: 367..389
e-value: 0.051
score: 22.7
coord: 395..415
e-value: 14.0
score: 12.1
coord: 43..63
e-value: 170.0
score: 2.4 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 369..389 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 342..362 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 135..155 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 70..90 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 182..202 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 289..309 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 314..334 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 133..156
score: 9.889 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 312..339
score: 12.362 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 180..203
score: 10.097 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 235..262
score: 10.201 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 287..309
score: 11.863 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 367..394
score: 12.715 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 108..127
score: 9.203 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 68..95
score: 9.515 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 395..423
score: 11.136 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 340..362
score: 12.549 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 261..282
score: 10.596 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 43..90 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 367..415 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 181..217 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 321..376 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 236..282 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 269..320 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 107..151 |
| None | No IPR available | PFAM | PF13912 | zf-C2H2_6 | coord: 395..417
e-value: 2.1E-4
score: 21.1 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 246..271
e-value: 1.7E-11
score: 43.8
coord: 272..295
e-value: 2.0E-11
score: 43.5 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 145..168
e-value: 0.0077
score: 15.7 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 40..78
e-value: 3.1E-4
score: 20.3
coord: 375..403
e-value: 6.7E-13
score: 48.1 |
| None | No IPR available | GENE3D | 2.20.25.10 | | coord: 336..346
e-value: 0.017
score: 14.6
coord: 360..374
e-value: 0.11
score: 12.0 |
| None | No IPR available | GENE3D | 2.10.110.10 | | coord: 191..221
e-value: 1.5E-6
score: 27.8 |
| None | No IPR available | PFAM | PF00096 | zf-C2H2 | coord: 287..309
e-value: 3.1E-4
score: 20.9
coord: 367..389
e-value: 0.0029
score: 17.9
coord: 236..257
e-value: 0.005
score: 17.1
coord: 181..202
e-value: 0.0088
score: 16.4
coord: 261..282
e-value: 7.2E-4
score: 19.8
coord: 312..334
e-value: 0.0043
score: 17.3
coord: 340..362
e-value: 2.4E-5
score: 24.4
coord: 108..128
e-value: 3.2E-4
score: 20.9 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 169..190
e-value: 0.014
score: 15.0 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 347..359
e-value: 2.1E-5
score: 24.1
coord: 404..423
e-value: 0.0065
score: 16.1 |
| None | No IPR available | GENE3D | 2.20.28.30 | | coord: 222..245
e-value: 2.6E-7
score: 30.3
coord: 119..144
e-value: 6.2E-9
score: 35.5
coord: 79..118
e-value: 2.8E-9
score: 36.6 |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | GENE3D | 3.30.40.10 | | coord: 319..335
e-value: 3.9E-7
score: 29.5 |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | GENE3D | 3.30.40.10 | | coord: 296..318
e-value: 1.8E-8
score: 34.1 |
Blast
BLAST of TCONS_00049349-protein vs. Swiss-Prot (Human)
Match: ZN182 (Zinc finger protein 182 OS=Homo sapiens GN=ZNF182 PE=2 SV=2) HSP 1 Score: 174.096 bits (440), Expect = 3.045e-48 Identity = 137/453 (30.24%), Postives = 214/453 (47.24%), Query Frame = 0
Query: 13 SGSSDQNLNNTLCAICGQYINLLSKNPG-EYCKCEECDAFFVTQNDRSMHQQ--KGIR-YKCGACQKLFACKSAVRIHTPTH----------------KTSPTNVNLSVSNSGVCFECKDCGVSFTTKHSLAIHQNNGI---EYQCTVCQKLFACKSAVLIHAQTHSLFHHH---------VESKETLSYNQTSPKFDADQCGVCKKSFSSEHRLRHHLKTHS-KVLTSCDKCGKGFSLEEFLDHNKNCSKKKFVLKCKICERFFFELSALNKHMNIHT--KPFSCSKCARSFARKKALERHQR--TRKCLFKCKECEKNFSNTDDFIKHKRTHYK---FECKDCGKLYNSKRNLLDHENSHKGIKAYPCETCGKSFSTSGSLATHKKMH-GPLLFNCEECGKCFAHKHSLERHVFLHKDIKSFKCETCGKGFKSKTNLNGHNKTVKCKSKEG 424
S SS +N + CA + NPG + +EC + S+HQ+ G + ++C AC+K F+ KS + +H TH + S ++L FEC +CG +F K ++ IH Y+C C K F KS +++H +TH+ + ++ + + ++ T +C CKK+FS + L H +TH+ + C +CGK F+ + L ++ + +C +C + F + S L H H+ KPF C++C ++F++K L HQR T + ++C ECEK FS I H+RTH + ++C +CGK + K L+ H+ H G K Y C C K+FS L H++ H G + C ECGK F K + H H K +KC CGK F K+NL H +T K G
Sbjct: 175 SRSSAENKYDNGCAKLFFHTEYEKTNPGMKPYGYKECGKGLRRKKGLSLHQRIKNGEKPFECTACRKTFSKKSHLIVHWRTHTGEKPFGCTECGKAFSQKSQLIIHLRTHTGERPFECPECGKAFREKSTVIIHYRTHTGEKPYECNECGKAFTQKSNLIVHQKTHTGEKTYECTKCGESFIQKLDLIIHHSTHTGKKPHECNECKKTFSDKSTLIIHQRTHTGEKPHKCTECGKSFNEKSTLIVHQRTHTGEKPYECDVCGKTFTQKSNLGVHQRTHSGEKPFECNECEKAFSQKSYLMLHQRGHTGEKPYECNECEKAFSQKSYLIIHQRTHTEEKPYKCNECGKAFREKSKLIIHQRIHTGEKPYECPVCWKAFSQKSQLIIHQRTHTGEKPYACTECGKAFREKSTFTVHQRTHTGEKPYKCTECGKAFTQKSNLIVHQRTHAGKKAHG 627
The following BLAST results are available for this feature:
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