TCONS_00049404-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00049404-protein
Unique NameTCONS_00049404-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length204

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00049404-protein ID=TCONS_00049404-protein|Name=TCONS_00049404-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI
ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQETFNNVK
QWLQEIDRYACESVNKLLVGNKCDLTAKKVVDFTTAKEFADSLGIPFLET
SAKNATNVEQAFMTMAAEIKNRMGPPQTAPEAGANKKVPLGPGSSVKQGG
GGCC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031359XLOC_031359Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00049404TCONS_00049404Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 147..169
score: 46.56
coord: 50..72
score: 58.53
coord: 9..30
score: 56.84
coord: 32..48
score: 35.4
coord: 112..125
score: 53.48
NoneNo IPR availableSMARTSM00177arf_sub_2coord: 1..173
e-value: 0.0034
score: 1.2
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 9..172
e-value: 2.3E-106
score: 369.4
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 14..202
e-value: 2.9E-6
score: 36.8
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 11..170
e-value: 8.0E-17
score: 71.9
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 6..172
e-value: 2.9E-36
score: 136.4
NoneNo IPR availableGENE3D3.40.50.300coord: 73..170
e-value: 2.0E-40
score: 136.4
NoneNo IPR availableGENE3D3.30.70.1390coord: 8..72
e-value: 4.7E-32
score: 109.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 173..204
NoneNo IPR availablePROSITEPS51419RABcoord: 4..204
score: 38.596
NoneNo IPR availableCDDcd01869Rab1_Ypt1coord: 7..172
e-value: 1.63439E-134
score: 376.284
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 7..165
e-value: 9.5E-34
score: 114.5
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 10..170
e-value: 2.0E-66
score: 222.5
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 4..182

Blast
[Close]
BLAST of TCONS_00049404-protein vs. Swiss-Prot (Human)
Match: RAB1A (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 367.851 bits (943), Expect = 1.155e-131
Identity = 180/204 (88.24%), Postives = 186/204 (91.18%), Query Frame = 0 
Query:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQETFNNVKQWLQEIDRYACESVNKLLVGNKCDLTAKKVVDFTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKNRMGPPQTAPEAGANKKVPLGPGSSVKQGGGGCC 204
            MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTDQE+FNNVKQWLQEIDRYA E+VNKLLVGNKCDLT KKVVD+TTAKEFADSLGIPFLETSAKNATNVEQ+FMTMAAEIK RMGP  TA   GA K       + VKQ GGGCC
Sbjct:    4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATA--GGAEKSNVKIQSTPVKQSGGGCC 205
The following BLAST results are available for this feature:
BLAST of TCONS_00049404-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB1A1.155e-13188.24Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1... [more]
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