TCONS_00049430-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00049430-protein
Unique Name	TCONS_00049430-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	313

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00049430-protein ID=TCONS_00049430-protein|Name=TCONS_00049430-protein|organism=Clytia hemisphaerica|type=polypeptide|length=313bp
MGVFRVIIVASISYYIFTHCDFKNLTTRIFLASLVSVYTSKRGYDKKSLS
FSGSLSAIVVGFLTTVANLSSFVCLLTFFVTSSFFTKWRSDRKRLIEENF
KEGGGRNMVQVFCNGGMLSVISLLFLSEVGYGERVINFSRDFTASCLLSS
MLGTLACCNGDTWASEIGTVAAFMKPRLITTWKKVPVGTNGGITLVGLCA
SAFGGLILGFAFLLSLKLFVGSDTFDMETQYHALRLTFYAGLFGSIVDSL
LGAFFQYSGYCSLRKKVVSQPSRTTEFISGSPVFDNDQVNLLSSLIMAVI
TPIYAYYSWPKYD

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_031376	XLOC_031376	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00049430	TCONS_00049430	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002794	DUF92_TMEM19

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002794	Protein of unknown function DUF92, TMEM19	PFAM	PF01940	DUF92	coord: 35..298 e-value: 1.4E-71 score: 240.6

Blast

[Close]

BLAST of TCONS_00049430-protein vs. Swiss-Prot (Human)
Match: TMM19 (Transmembrane protein 19 OS=Homo sapiens GN=TMEM19 PE=1 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 6.375e-84
Identity = 136/316 (43.04%), Postives = 197/316 (62.34%), Query Frame = 0

Query:    3 VFRVIIVASISYYIFTHCD---FKNLTT----RIFLASLVSVYTSKRGYDKKSLSFSGSLSAIVVGFLTTVANLSSFVCLLTFFVTSSFFTKWRSDRKRLIEENFKEGGGRNMVQVFCNGGMLSVISLLFLSEVGYGERVINFSRDFTASCLLSSMLGTLACCNGDTWASEIGTVAAFMKPRLITTWKKVPVGTNGGITLVGLCASAFGGLILGFAFLLSLKLFVGSDTFDMETQYHALRLTFYAGLFGSIVDSLLGAFFQYSGYCSLRKKVVSQPSRTTEFISGSPVFDNDQVNLLSSLIMAVITPIYAYYSWPK 311
            +  +II  S++++I +      + NL      R   + +V V     G  KKSL  SG+L  +VVGF+ T+AN S F  LL FF++SS  TKW+ + K+ ++  +KEGG RN VQVFCNG + + ++LL++ E G GE  ++FS+ ++AS +  S+L  LAC  GDTWASE+G V +   PRLITTW+KVPVGTNGG+T+VGL +S  GG  +G A+ L+  +FV +D      Q+  +     AGL GSIVDS LGA  QY+G       VV+ P+     I+G P+ DN+ VNL SS+++A++ P  A+  WP+
Sbjct:   21 ILSLIICISLAFWIISMTASTYYGNLRPISPWRWLFSVVVPVLIVSNGLKKKSLDHSGALGGLVVGFILTIANFSFFTSLLMFFLSSSKLTKWKGEVKKRLDSEYKEGGQRNWVQVFCNGAVPTELALLYMIENGPGEIPVDFSKQYSASWMCLSLLAALACSAGDTWASEVGPVLSKSSPRLITTWEKVPVGTNGGVTVVGLVSSLLGGTFVGIAYFLTQLIFV-NDLDISAPQWPIIAFGGLAGLLGSIVDSYLGATMQYTGLDESTGMVVNSPTNKARHIAGKPILDNNAVNLFSSVLIALLLPTAAWGFWPR 335

The following BLAST results are available for this feature:

BLAST of TCONS_00049430-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00049430-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TMM19	6.375e-84	43.04	Transmembrane protein 19 OS=Homo sapiens GN=TMEM19...	[more]

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TCONS_00049430-protein (polypeptide) - C. hemisphaerica