TCONS_00049434-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00049434-protein
Unique Name	TCONS_00049434-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	950

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00049434-protein ID=TCONS_00049434-protein|Name=TCONS_00049434-protein|organism=Clytia hemisphaerica|type=polypeptide|length=950bp
MQTLHSMFKSNPPEENLSADLNCKLILALYDFQPSFNDVHVAEAWLAVQL
EAHSNLSLLDNKLCLKHLTKFFGTALNFFQSDHMDVVKAAANYMKEASEK
CMESYIDILEEDVTSNSSSFLKILKIMESGLTYKFQPVWNIVLQSLQYLY
ATYGRLFPNQMVYSVANVIQMYSGPAAPFFNNLKKTIGAAFTSMGPKLIL
NDTPLELIKDSSDCQFPRAWLLPIMKDSIKQTELQYFIDEFLPVAAHLKR
RGEECRKNKEDLEAKVYETLLSQVWSLLTGFCHKPTDVSTAFKNIAKVMG
SALTDQKNLRQLVIQALRNLISTAEEESTKFIGQFAKNYLPILFNLYTSD
DEDCKGISLHVLEGIRSFLIVADEKLVLMFLDKSLEKLDSEKSSLKKHQL
MDLIVSMVKYCDDNHLNKLFKLMLTHIDSKDRSMQKKSYRMLEEMLEANS
ESCKKQISVRFDEIKALLADSLSSAKPSSKAPRLRCLSCLVKRLTRDQKD
FLQAIIPEVILCTKEIGVKAKTAAFELIVDIGTALVFLSDKPKEECIEEY
FTLVMAGLAGSPHMISGTLLAFTKMVFEYRYCLAEKLIGSLLEAAILLLK
HKSSDVVKASLIFVRALVKILDASELTGHLGTMINNLFAWSATSKSAHRQ
QIRIILERLDKKCGYATIRPLVPEEHRKFIVQIHKQMERNKRKKDDRKNA
DEGDDVIEQKENTWEDILAESADEEEESVHKRPNKQRGGDKKDKKSSSGT
KTWIMEGDETVDLMDPKIAQNIVGTRPKLHARKRGGASAGFEMSSDGKFM
IDNKTNDQTNNEDDITEKPLDIGQQDMLAGFDKTPKQLKAGKRKMLEDMP
ESEGGKFEYQPGGRGIHRDRDMDDDDQPAPKRRFGGEYKAKKAGGDMKLK
GKPDPYAYIPLDRQKLNKRKRAKLTGQFNSMVKATKRGAAKSKQQKKHKK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_031377	XLOC_031377	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00049434	TCONS_00049434	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011989	ARM-like
IPR012978	Uncharacterised_NUC173
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 245..265
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 846..950
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 686..753
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 779..816
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 225..683 e-value: 9.3E-24 score: 83.3
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 50..187 e-value: 0.11 score: 10.2
IPR012978	Uncharacterised domain NUC173	PFAM	PF08161	NUC173	coord: 122..323 e-value: 3.0E-58 score: 196.8
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 268..727

Blast

[Close]

BLAST of TCONS_00049434-protein vs. Swiss-Prot (Human)
Match: RRP12 (RRP12-like protein OS=Homo sapiens GN=RRP12 PE=1 SV=2)

HSP 1 Score: 558.14 bits (1437), Expect = 1.365e-180
Identity = 343/972 (35.29%), Postives = 552/972 (56.79%), Query Frame = 0

Query:    1 MQTLHSMFKSNPPEENLSADLNCKLILALYDFQPSFNDVHVAEAWLAVQLEAHSNLSLLDNKLCLKHLTKFFGTALNFFQSDHMDVVKAAANYMKEASEKCMESYI-DILEEDVTSNSS----SFLKILKIMESGLTYKFQPVWNIVLQSLQYLYATYGRLFPNQMVYSVANVIQMYSGPAAPFFNNLKKTIGAAFTSMGPKLILNDTPLELIKDSSDCQFPRAWLLPIMKDSIKQTELQYFIDEFLPVAAHLKRRGEECRKNKEDLEAKVYETLLSQVWSLLTGFCHKPTDVSTAFKNIAKVMGSALTDQKNLRQLVIQALRNLISTA--EEESTKFIGQFAKNYLPILFNLYTSD--DEDCKGISLHVLEGIRSFLIVADEKLVLMFLDKSLEK-LDSEKSSLKKHQLMDLIVSMVKYCDDNHLNKLFKLMLTHIDSKDRSMQKKSYRMLEEMLEANSESCKKQISVRFDEIKALLADSLSSAKPSSKAPRLRCLSCLVKRLTRDQKDFLQAIIPEVILCTKEIGVKAKTAAFELIVDIGTALVFLSDKPKEECIEEYFTLVMAGLAGSPHMISGTLLAFTKMVFEYRYCLAEKLIGSLLEAAILLLKHKSSDVVKASLIFVRALVKILDASELTGHLGTMINNLFAWSATSKSAHRQQIRIILERLDKKCGYATIRPLVPEEHRKFIVQIHKQMERNKRKKDDRKNA-------DEGDDVIEQKENTWEDILAESADEEEESVHKRPNKQRGGDKKDKKSSSGTKTWIME--GDETVDLMDPKIAQNIVGTRPKL-HARKRGGASAGFEMSSDGKFMIDNKTNDQTNNEDDIT----EKPLDIGQQDMLAGFDKTPKQLKAGKRKMLEDMPESEGGKFEYQPGGRGIHRDRDMDDDDQPAPKRRF-GGEYKAKKAGGDMKLKGKPDPYAYIPLDRQKLNKRKRAKLTGQFNSMVKATKRGAAKSKQQKK 947
            MQ  HS+F + P    LSA+LN ++I ALYD+ PS ND+    AWL V  +AH NL  L   L L HL +FFGTA+    S H  V+ AA   +KE  ++C+  ++ DI    VTS++S    S  K+ + +E GLTYKF   W+ VLQ L   +   GR     M   + ++  +   P  P    L + +GAA TSMGP+++L   PLE+        FPR+WLLP+++D +++T L +F   FLP+A  LK +  +  +    +E+K+Y+TL  Q+W+LL GFC +PTDV+ +FK +A+ +G A++++ +LR  V QALR LI+     E     + +FAKN+LPILFNLY       D       VLE IR++L + D +LV   L+K+ EK LD   S   +  ++DL+V++    D+  ++KL+  +  +++SK   +QKK+YR+LEE+  +        +    +++K  L DSL S    +K PRL+CL  +V++L+ + K+F+ A+IPEVILCTKE+ V A+  AF L+V++G A +      +EE ++ Y  L+  GL G+  M+S ++LA T ++FE++  +    +  LLE   LLL  ++ DVVK++L F++  V ++D + L  H+  ++  +   S   +   R ++R +  +  +K G+  ++ L+PEE+ + +V I K   R KR +   + A       +E ++  + K ++ E+ILA+S DEE+    +R      G ++ K +   ++ W+ E  GDE ++ +DPK+AQ ++ T+P     RK+     GF++S+DG+ +I  + +     E++      E+  D  +  ++        + +    +   ++P       +YQ GG GIHR         P  K+   G EYKAKKA GD+K KG+PDPYAYIPL+R KLN+RK+ KL GQF  +VKA +RG+    + ++
Sbjct:  346 MQAFHSLFHARPGLSTLSAELNAQIITALYDYVPSENDLQPLLAWLKVMEKAHINLVRLQWDLGLGHLPRFFGTAVTCLLSPHSQVLTAATQSLKEILKECVAPHMADI--GSVTSSASGPAQSVAKMFRAVEEGLTYKFHAAWSSVLQLLCVFFEACGRQAHPVMRKCLQSLCDLRLSPHFPHTAALDQAVGAAVTSMGPEVVLQAVPLEIDGSEETLDFPRSWLLPVIRDHVQETRLGFFTTYFLPLANTLKSKAMDLAQAGSTVESKIYDTLQWQMWTLLPGFCTRPTDVAISFKGLARTLGMAISERPDLRVTVCQALRTLITKGCQAEADRAEVSRFAKNFLPILFNLYGQPVAAGDTPAPRRAVLETIRTYLTITDTQLVNSLLEKASEKVLDPASSDFTRLSVLDLVVALAPCADEAAISKLYSTIRPYLESKAHGVQKKAYRVLEEVCASPQGPGALFVQSHLEDLKKTLLDSLRSTSSPAKRPRLKCLLHIVRKLSAEHKEFITALIPEVILCTKEVSVGARKNAFALLVEMGHAFLRFGSN-QEEALQCYLVLIYPGLVGAVTMVSCSILALTHLLFEFKGLMGTSTVEQLLENVCLLLASRTRDVVKSALGFIKVAVTVMDVAHLAKHVQLVMEAIGKLSDDMRRHFRMKLRNLFTKFIRKFGFELVKRLLPEEYHRVLVNIRKAEARAKRHRALSQAAVEEEEEEEEEEEPAQGKGDSIEEILADSEDEEDNEEEERSR----GKEQRKLARQRSRAWLKEGGGDEPLNFLDPKVAQRVLATQPGPGRGRKK---DHGFKVSADGRLIIREEADGNKMEEEEGAKGEDEEMADPMEDVIIRNKKHQKLKHQKEAEEEELEIPP------QYQAGGSGIHR---------PVAKKAMPGAEYKAKKAKGDVKKKGRPDPYAYIPLNRSKLNRRKKMKLQGQFKGLVKAARRGSQVGHKNRR 1292

The following BLAST results are available for this feature:

BLAST of TCONS_00049434-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00049434-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RRP12	1.365e-180	35.29	RRP12-like protein OS=Homo sapiens GN=RRP12 PE=1 S...	[more]

You are here

TCONS_00049434-protein (polypeptide) - C. hemisphaerica