TCONS_00049435-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00049435-protein
Unique NameTCONS_00049435-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length174

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00049435-protein ID=TCONS_00049435-protein|Name=TCONS_00049435-protein|organism=Clytia hemisphaerica|type=polypeptide|length=174bp
MTLLESTTEEGSCTAVLYLLSLVIKKVPTTVLRTKCAESLKCFTVIMEAH
HENGRASLLMGLLDCLATTLNAQDPAIWTEHSTQRSFQMMLMFIIHSKPK
VRKVAHNSIQSILKLGLLNHKNHPSGSLTAKHLIQIFQQNSSDTATMCHH
SLNFLKNCLHYFGEKQLKELCEAI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031378XLOC_031378Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00049435TCONS_00049435Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 1..174
e-value: 5.5E-6
score: 24.7
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 5..173

Blast
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BLAST of TCONS_00049435-protein vs. Swiss-Prot (Human)
Match: RRP12 (RRP12-like protein OS=Homo sapiens GN=RRP12 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.190e-22
Identity = 67/179 (37.43%), Postives = 93/179 (51.96%), Query Frame = 0 
Query:    1 MTLLESTTEEGSCTAVLYLLSLVIKKVPTTVLRTKCAESLKCFTVIMEAHHENGRASLLMGLLDCLATTLNAQDPAIWTEHSTQRSFQMMLMFIIHSKPKVRKVAHNSIQSILKLGLLNHKN----HPSGSLTAKHLIQ-IFQQNSSDTATMCHHSLNFLKNCLHYFGEKQLKELCEAI 174
            MT +E+     S  AV YLL+LV+K+VP+ VL  K +++ K F  IM A   +G  S+L  +L CLAT L  QD   W    T + +  +L F +H KPK+RK A + + S+LK      +     HP+   TAK  IQ I +   S  AT   H L  LK+ L  F E  +K   E +
Sbjct:  152 MTTMEAVESPESLAAVAYLLNLVLKRVPSPVLIKKFSDTSKAFMDIMSAQASSGSTSVLRWVLSCLATLLRKQDLEAWGYPVTLQVYHGLLSFTVHPKPKIRKAAQHGVCSVLKGSEFMFEKAPAHHPAAISTAKFCIQEIEKSGGSKEATTTLHMLTLLKDLLPCFPEGLVKSCSETL 330
The following BLAST results are available for this feature:
BLAST of TCONS_00049435-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RRP121.190e-2237.43RRP12-like protein OS=Homo sapiens GN=RRP12 PE=1 S... [more]
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