TCONS_00049436-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00049436-protein
Unique NameTCONS_00049436-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length360

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00049436-protein ID=TCONS_00049436-protein|Name=TCONS_00049436-protein|organism=Clytia hemisphaerica|type=polypeptide|length=360bp
MTNKERYDLWIGSELGLLKGVVLKKESFVNFGDITSLDKTQCITSMCWQK
QDKKLTNIVFGLKNGTVKTFDTSTCEMGTSLTCNKVAPVRGVAALPDGSI
VTCLENGNLQRWKNGQCDLEKSVGDDIKVMVHNKNTNDVIATGGQENDLK
LWQLKSLDKPIFTAKNVKNDFLNLRVPIWITAIDFFNEDNNRVAVGSANH
VVRVYDRREKRRPVFETDWHEHPITALTLKPNNHSIFLGNSAGHMSELDL
RSGKQLGAFKGNAGSIRSIVCHKTQPYIGVCGLDRVFKLYDTNRKIVKQI
YMKSNLNFILMPDTELQLTEVSGEKRERATEDGEEADVWQNMETVNDESK
SEKPKKKKKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031379XLOC_031379Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00049436TCONS_00049436Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 30..71
e-value: 97.0
score: 4.5
coord: 170..206
e-value: 3.1
score: 13.9
coord: 252..291
e-value: 0.048
score: 22.8
coord: 114..153
e-value: 110.0
score: 4.2
coord: 74..113
e-value: 35.0
score: 7.3
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 30..142
e-value: 1.3E-9
score: 37.1
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 143..325
e-value: 7.1E-24
score: 84.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 321..360
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 186..300
score: 9.309
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 38..301

Blast
BLAST of TCONS_00049436-protein vs. Swiss-Prot (Human)
Match: WDR74 (WD repeat-containing protein 74 OS=Homo sapiens GN=WDR74 PE=1 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 4.416e-71
Identity = 130/372 (34.95%), Postives = 209/372 (56.18%), Query Frame = 0
Query:    9 LWIGSELGLLKGVVLKKESFVNFGDITSLDKTQCITSMCWQKQDKKLTNIVFGLKNGTVKTFDTSTCEMGTSLTC-NKVAPVRGVAALPDGSIVTCLENGNLQRWKNGQCD------LEKSVGDDIKVMVHNKNTNDVIATGGQENDLKLWQLKSLDKPIFTAKNVKNDFLNLRVPIWITAIDFFNEDNNRVAVGSANHVVRVYD-RREKRRPVFETDWHEHPITALTLKPNNHSIFLGNSAGHMSELDLRSGKQLGAFKGNAGSIRSIVCHKTQPYIGVCGLDRVFKLY--DTNRKIVKQIYMKSNLNFILMP--DTELQLTEVSGEKRERATEDGEEADVWQNMETVNDESKS--EKP------KKKKKK 360
            +W+G+E G+LKGV L+++   NF       + + ++++CW    +  T ++ G  + TVK F T          C       RG+A   DG+++TC+++G L+ W +   D      LE  VG  +  M  +     V+ATGG+EN LK+W L+  ++P+F AKNV+ND+L+LRVPIW   I F    + ++   +  H VRVYD    +RRPV ET + E+P+TA+TL P  +S+ +GN+ G ++E+DLR G+ LG  KG AGS+R + CH ++P +  CGLDRV +++     R +  ++Y+KS LN +L+   D      +   E  +   ED E  ++W ++E       S  E+P      +++KKK
Sbjct:   11 VWVGTETGILKGVNLQRKQAANFTAGGQPRREEAVSALCWGTGGE--TQMLVGCADRTVKHFSTEDGIFQGQRHCPGGEGMFRGLAQA-DGTLITCVDSGILRVWHDKDKDTSSDPLLELRVGPGVCRMRQDPAHPHVVATGGKENALKIWDLQGSEEPVFRAKNVRNDWLDLRVPIWDQDIQFL-PGSQKLVTCTGYHQVRVYDPASPQRRPVLETTYGEYPLTAMTLTPGGNSVIVGNTHGQLAEIDLRQGRLLGCLKGLAGSVRGLQCHPSKPLLASCGLDRVLRIHRIQNPRGLEHKVYLKSQLNCLLLSGRDNWEDEPQEPQEPNKVPLEDTETDELWASLEAAAKRKLSGLEQPQGALQTRRRKKK 378          
The following BLAST results are available for this feature:
BLAST of TCONS_00049436-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR744.416e-7134.95WD repeat-containing protein 74 OS=Homo sapiens GN... [more]
back to top