TCONS_00049472-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00049472-protein
Unique Name	TCONS_00049472-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1009

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00049472-protein ID=TCONS_00049472-protein|Name=TCONS_00049472-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1009bp
CSTALLPRNLYLTTKRKTFITIMSEESLPPDWIKCMSKKFKQAYFFNTQT
NETSWVHPLLKNKGVPDEPTEKTKPSKGDINAKMKKKKTDEKASSGKEPN
KNLKIPKQTKPPISKAKEKPDPKKLSSKELEKLGVAQRKRTEKIALWAEN
VNKSSSNPKNSSETQKTKPKKKAKDTSVTSNDEPKTETAKEPTSKTAKRL
SEIINKKTVDTSKKIPKIPKKDKNKTKEAGKETEKNTTKELKPQTEDNEN
PFLLSSKISYANYIESPNPFAPTTKSSSTAEPKYDNFVDSPNPFAPTAKP
NSSKEHINYIESPHPFAPTTRTFNRESSNNIQQNETDEDMTEDENLADQQ
IHFNKSTQQQQNSNIFNTHQQQNPFKKEQPFTFQQQNNPFQQNVNNSAQH
PQTSTFGQKNGFHQQDPQPTSHSGRLEEQSLANYAPIVQEGEASDMEIDD
VVQFSKEIMKEIREMRSENVVSKPAVATENAPMEVKNLIYTDPLYIVLDT
NILLAHLKFVSDLKDYPIPGIGTPILYIPWMVLQELDSLKDAVNRHHTQT
DQSGAEKTYKLNILARKAIKFINTCLEADHPRVKGQTAIEASTPIDGFTE
ESNDDAIIHAALSLKLRACHSNIVMFSNDRNLCNKAMVGGIKAFSQQNLM
MGIRSLYQNGTVAIRKENYQEYYEAYKVQEIIAKERKQADELSCELQCML
REGLSQVIEHEMKEAYGPDMWLHIVKIQPPWTLQDVFTLLEKHWIAVFGH
VIQRNRLKIVEELKKKFQDAEGIAGTLQVSHDLIEFSVRLFEAFSIRSSY
NDMMTKCLAGCRVLLDKCNEYIQEKNGTVAHANPNQGKLHQTKENVSVER
EEGEAIHTNTVKHGTVLDTFDDIWRTVTHYSALIFRSLDFPSQLVKELDP
NEPKPDPKEANACLTVMTKCLLQLIRKIQDVVRIPVERLIESEEVLVQLL
QAVSAFMKEVMKRECFVTPIELLHFSQDKNTRTALIQGLSQLDRSYAMLQ
QCIEYQRSI

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_031388	XLOC_031388	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00049472	TCONS_00049472	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002716	PIN_dom
IPR001202	WW_dom
IPR029060	PIN_domain-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 682..702
None	No IPR available	GENE3D	2.20.70.10		coord: 22..131 e-value: 4.2E-8 score: 32.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 265..344
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..253
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 391..428
None	No IPR available	CDD	cd09880	PIN_Smg5-Smg6-like	coord: 495..650 e-value: 3.67183E-41 score: 147.792
None	No IPR available	CDD	cd00201	WW	coord: 29..58 e-value: 6.25042E-5 score: 40.589
IPR002716	PIN domain	SMART	SM00670	PIN_9	coord: 494..634 e-value: 1.3E-5 score: 34.6
IPR002716	PIN domain	PFAM	PF13638	PIN_4	coord: 496..645 e-value: 3.8E-27 score: 95.1
IPR001202	WW domain	SMART	SM00456	ww_5	coord: 27..60 e-value: 5.7E-6 score: 35.8
IPR001202	WW domain	PFAM	PF00397	WW	coord: 28..58 e-value: 1.2E-7 score: 31.6
IPR001202	WW domain	PROSITE	PS01159	WW_DOMAIN_1	coord: 32..58
IPR001202	WW domain	PROSITE	PS50020	WW_DOMAIN_2	coord: 26..60 score: 12.275
IPR001202	WW domain	SUPERFAMILY	51045	WW domain	coord: 23..60
IPR029060	PIN domain-like	GENE3D	3.40.50.1010		coord: 493..680 e-value: 1.0E-25 score: 90.3
IPR029060	PIN domain-like	SUPERFAMILY	88723	PIN domain-like	coord: 493..651

Blast

[Close]

BLAST of TCONS_00049472-protein vs. Swiss-Prot (Human)
Match: SWT1 (Transcriptional protein SWT1 OS=Homo sapiens GN=SWT1 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 3.523e-42
Identity = 211/894 (23.60%), Postives = 374/894 (41.83%), Query Frame = 0

Query:   73 TKPSKGDINAKMKKKKTDEKASSGKEPNKNLKIPKQTKPPISKAKEKPDPKKLSSKELEKL--GVAQRKRTEKIALWAENVNKSSSNPKNSSETQKTKPKKKAKDTSVTSNDEPKTETAKEPTSKTAKRLSEIINKKTVDTSKKIPKIPKKDKNKTKEAGKETEKNTTKELKPQTE----DNENPFLLSSKISYANYIESPNP-FAPTTKSSSTAEPKYDNFVDSPNPFAPTAKPNSSKEHINYIESPHPFAPTTRTFNRESSNNIQQNETDEDMTEDENLADQQIHFNKSTQQQQN-SNIFNTHQQQNPFKKEQPFTFQQQNNPF-QQNVNNSAQHPQTSTFGQKNGFHQQDPQPTSHSGRLEEQSLANYAPIVQ-EGEASDMEIDDVVQFSKEIMKEIREMRSENVVSKPAVATENAPMEVKNLIYTDPLYIVLDTNILLAHLKFVSDLKDYPIPGIGTPILYIPWMVLQELDSLKDAVNRHHTQTDQSGAEKTYKLNILARKAIKFINTCLEADHPRVKGQTAIEASTPIDGFTEESNDDAIIHAALSLK-LRACHSNIVMFSNDRNLCNKAMVGGIKAFSQQNLMMGIRSLYQNGTV----AIRKENYQE----YYEAYKVQEIIAKERKQADELSCELQCMLREGLSQVIEHEMKEAYGPDMWLHIVKIQPPWTLQDVFTLLEKHWIAVFGHVIQRNRLKIVEELKKKFQDAEGIAGTLQVSHDLIEFSVRLFEAFSIRSSYNDMMTKCLAGCRVLLDKCNEYIQEKNGTVAHANPNQGKLHQTKENVSVEREEGEAI---HTNTV------------KHGTVLDTFDDIWRTVTHYSALIFRSLDFPSQLVKELDPNEPKPDPKEANACLTVMTKCLLQLIRKIQDVV 932
            +K S G      +K  T    + G++  K  K P  +    S      + +KL S   + L   + +R+  +++++  + + +    PK  S +Q+     K K+ S +++++   ++   P+S   K+  +I   K VD   K  K+              +      ++KP+ E    +N+   LL  +       +  N  F   ++     + K + F    N      +P  S+      + P     T +    E+  NI  N +     E E L   Q+  N + Q+ ++  + F   +  + +K++  +  Q+ N+   ++N+  S + P  S   +      Q+ Q       +EE   A     V   GE   MEID                  ++V S  A  T +             L IV+DTNIL+ HLKFV  LK   +PG    +L IPW+V+QELD +K+       Q               A  A+ FIN  L+    ++ GQ+   AS    G ++E+NDD ++   L  + L  C S +++ ++DRNL NK ++ G+K+ S++ L   +  L  N  V     I K+  +       E+YK +   +      + +  +L+  L  GLS ++E EMK A+G ++W+ I+ ++PPWTL  +    +KHW+AVFG V+++N L  +E L K  + A        V   L++ S  L  AFS RS+Y+ ++ +  A       + N  +Q          PN      + EN   +++EG ++   H   +            +H  +    + +W T+   S  +F+ L   S L             +EA  CL  +   +  ++  IQ ++
Sbjct:    3 SKESCGKKETSQRKDTTTSSPNFGEKDKKERKTPASSTSSSSIRSVSSEKRKLKSDHTDVLYYNIKRRQGLKRLSVEIDTLRR---RPKIGSSSQRP---IKLKEASYSNDNQIILQS---PSSNGTKK--DI--HKCVDFKPKDIKLTNAGSKLDHGIKSLSSPKIASDVKPKAEGQASENKWSHLLVQREKMKELKKGRNSKFRDNSEKCVLEKWKRNQFSQDYNSNKIIKEPLGSRRQKISFKIPIKSRDTLQKLVEENVFNIDSNNSKTKQEEREYLESSQVSLNVTRQKTEHLLSDFTYKRTVHEWKRKHHYDHQESNDSHSRENLTQSFEAPCCSVSSESIQDADQEMQI------VEELHAARVGKSVDLPGELMSMEID----------------LEDDVHSSSANNTSDR-----------KLLIVIDTNILMNHLKFVRILKTTEVPGFDKLVLIIPWVVMQELDRMKEGKLLKRAQHK-------------AIPAVHFINDSLKNQDRKLWGQSIQLASQKHYGLSDENNDDRVLKCCLQHQELFPC-SFVILCTDDRNLRNKGLISGVKSLSKEELSAELLHLSLNTDVCHQPCIPKQQLKAETTPLKESYKEESTNSGLSILLESIVSDLEKSLGTGLSSILETEMKIAFG-NLWMEILYLKPPWTLLHLLQCFKKHWLAVFGLVMEKNLLLTIESLYKNLRKANKAVDFTTVKF-LLQDSRSLLHAFSTRSNYDGILPQTFA-------QVNNLLQTFAEVKTKLKPN------SSENTVTKKQEGTSLKNSHNQEITVFSSSHLPQPSRHQEIWSILESVWITIYQNSTDVFQRLGSNSALT-----TSNIASFEEAFICLQKLMAAVRDILEGIQRIL 816

The following BLAST results are available for this feature:

BLAST of TCONS_00049472-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00049472-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SWT1	3.523e-42	23.60	Transcriptional protein SWT1 OS=Homo sapiens GN=SW...	[more]

You are here

TCONS_00049472-protein (polypeptide) - C. hemisphaerica