TCONS_00049499-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00049499-protein
Unique NameTCONS_00049499-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length313

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00049499-protein ID=TCONS_00049499-protein|Name=TCONS_00049499-protein|organism=Clytia hemisphaerica|type=polypeptide|length=313bp
MISKMASILRQRQVLQGLLNNHRCFSTNSILNAINKQQLTTLRKKTGYSF
TKCNEAMKLYENDMEKAEIWLHQQAEKEGWAKAKKLQSRSTSEGLIGVLT
EQNYIALVEVACETDFVARNELFTELVGSTAQSVLKFRQKVIEQNMKVSS
NQEITHLREMVLEHDLKEMKHPSLDVTLEEHLVQLVGKIGENMKIKRALA
MTTNQENIIGVSTHGGNNTVTSNGSLLGKFAGVVVLKPKTTDVDVENLKK
IARDLSQHVIGMNPIALQPSNDVSKEESLLGQEFLLNDKVTVAELLNQNQ
ADVVDFIRYGLTS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031400XLOC_031400Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00049499TCONS_00049499Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014039Transl_elong_EFTs/EF1B_dimer
IPR001816Transl_elong_EFTs/EF1B
IPR009060UBA-like
Vocabulary: Biological Process
TermDefinition
GO:0006414translational elongation
Vocabulary: Molecular Function
TermDefinition
GO:0003746translation elongation factor activity
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006414 translational elongation
cellular_component GO:0005622 intracellular
molecular_function GO:0005515 protein binding
molecular_function GO:0003746 translation elongation factor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014039Translation elongation factor EFTs/EF1B, dimerisationPFAMPF00889EF_TScoord: 106..275
e-value: 7.5E-22
score: 77.9
IPR014039Translation elongation factor EFTs/EF1B, dimerisationGENE3D3.30.479.20coord: 92..220
e-value: 3.8E-20
score: 71.7
IPR014039Translation elongation factor EFTs/EF1B, dimerisationGENE3D3.30.479.20coord: 223..312
e-value: 9.0E-14
score: 51.2
IPR014039Translation elongation factor EFTs/EF1B, dimerisationSUPERFAMILY54713Elongation factor Ts (EF-Ts), dimerisation domaincoord: 88..200
IPR014039Translation elongation factor EFTs/EF1B, dimerisationSUPERFAMILY54713Elongation factor Ts (EF-Ts), dimerisation domaincoord: 252..309
coord: 91..126
NoneNo IPR availableGENE3D1.10.8.10coord: 33..91
e-value: 4.3E-16
score: 58.4
NoneNo IPR availableCDDcd14275UBA_EF-Tscoord: 37..73
e-value: 3.07391E-7
score: 45.0758
IPR001816Translation elongation factor EFTs/EF1BHAMAPMF_00050EF_Tscoord: 33..313
score: 20.959
IPR009060UBA-likeSUPERFAMILY46934UBA-likecoord: 34..86

Blast
[Close]
BLAST of TCONS_00049499-protein vs. Swiss-Prot (Human)
Match: EFTS (Elongation factor Ts, mitochondrial OS=Homo sapiens GN=TSFM PE=1 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 1.764e-55
Identity = 103/285 (36.14%), Postives = 160/285 (56.14%), Query Frame = 0 
Query:   32 NAINKQQLTTLRKKTGYSFTKCNEAMKLYENDMEKAEIWLHQQAEKEGWAKAKKLQSRSTSEGLIGVLTEQNYIALVEVACETDFVARNELFTELVGSTAQSVLKFRQKVIEQNMKVS----SNQEITHLREMVLEHDLKEMKHPSLDVTLEEHLVQLVGKIGENMKIKRALAMTTNQENIIGVSTHGGNNTVTSNGSLLGKFAGVVVLKPKTTDVDVENLKKIARDLSQHVIGMNPIALQPSNDVSKEES---LLGQEFLLNDKVTVAELLNQNQADVVDFIRY 309
            +A +K+ L  LR+KTGYSF  C +A++    D+++AEIWLH++A+KEGW+KA KLQ R T EGLIG+L E N   LVEV CETDFV+RN  F  LV   A   +   Q + +Q    S    ++ E++ L              P  + +L++ L   +GK+GENM +KRA  +       +G   HG   + + +  +LGK+  +V+ +   T     NL+ + R L QHV+GM P+++   +D    E+   +L Q +LL+  +T+ + +      VVDF+R+
Sbjct:   43 SASSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKEAQKEGWSKAAKLQGRKTKEGLIGLLQEGNTTVLVEVNCETDFVSRNLKFQLLVQQVALGTMMHCQTLKDQPSAYSKGFLNSSELSGLPA-----------GPDREGSLKDQLALAIGKLGENMILKRAAWVKVPSGFYVGSYVHGAMQSPSLHKLVLGKYGALVICE---TSEQKTNLEDVGRRLGQHVVGMAPLSVGSLDDEPGGEAETKMLSQPYLLDPSITLGQYVQPQGVSVVDFVRF 313
The following BLAST results are available for this feature:
BLAST of TCONS_00049499-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EFTS1.764e-5536.14Elongation factor Ts, mitochondrial OS=Homo sapien... [more]
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