TCONS_00049502-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00049502-protein
Unique NameTCONS_00049502-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length273

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00049502-protein ID=TCONS_00049502-protein|Name=TCONS_00049502-protein|organism=Clytia hemisphaerica|type=polypeptide|length=273bp
MPYASQPKVKISELSDENIKFTLEDTDLSMANGLRRIFISEVPTIAIDWV
QIENNTSVLHDEFIAHRVGLIPLTCDESVEGMSYSRDCTCIDFCPECSVE
FTLEVKCTEDTTRRITSRDLISANPKIVPVTSQNKDDDSDMQENNDIIIL
KLRKGQELKLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNVMRHTTYPRPE
EWPKSEYSQLDEDQTQGDFDVGAKPNKFFFNVETSGSLRPERIILSGLSV
LKKKLSDLQTQHSHEIAADVLAI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031401XLOC_031401Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00049502TCONS_00049502Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011263DNA-dir_RNA_pol_RpoA/D/Rpb3
IPR011262DNA-dir_RNA_pol_insert
IPR009025RBP11-like_dimer
Vocabulary: Molecular Function
TermDefinition
GO:0003899DNA-directed 5'-3' RNA polymerase activity
GO:0046983protein dimerization activity
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0046983 protein dimerization activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011263DNA-directed RNA polymerase, RpoA/D/Rpb3-typeSMARTSM00662rpoldneu2coord: 18..261
e-value: 9.2E-94
score: 327.5
IPR011263DNA-directed RNA polymerase, RpoA/D/Rpb3-typePFAMPF01193RNA_pol_Lcoord: 20..255
e-value: 1.5E-19
score: 69.0
NoneNo IPR availableGENE3D3.30.1360.10coord: 205..267
e-value: 2.9E-6
score: 26.6
NoneNo IPR availableCDDcd07031RNAP_II_RPB3coord: 7..265
e-value: 5.28285E-152
score: 427.405
IPR011262DNA-directed RNA polymerase, insert domainPFAMPF01000RNA_pol_A_baccoord: 50..176
e-value: 1.7E-37
score: 128.1
IPR011262DNA-directed RNA polymerase, insert domainGENE3D2.170.120.12coord: 44..175
e-value: 3.7E-48
score: 162.7
IPR011262DNA-directed RNA polymerase, insert domainSUPERFAMILY56553Insert subdomain of RNA polymerase alpha subunitcoord: 43..177
IPR009025DNA-directed RNA polymerase, RBP11-like dimerisation domainSUPERFAMILY55257RBP11-like subunits of RNA polymerasecoord: 183..264
coord: 6..48

Blast
[Close]
BLAST of TCONS_00049502-protein vs. Swiss-Prot (Human)
Match: RPB3 (DNA-directed RNA polymerase II subunit RPB3 OS=Homo sapiens GN=POLR2C PE=1 SV=2)

HSP 1 Score: 429.098 bits (1102), Expect = 1.425e-153
Identity = 194/274 (70.80%), Postives = 240/274 (87.59%), Query Frame = 0 
Query:    1 MPYASQPKVKISELSDENIKFTLEDTDLSMANGLRRIFISEVPTIAIDWVQIENNTSVLHDEFIAHRVGLIPLTCDESVEGMSYSRDCTCIDFCPECSVEFTLEVKCTEDTTRRITSRDLISANPKIVPVTSQNKDDD-SDMQENNDIIILKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNVMRHTTYPRPEEWPKSEYSQLDEDQTQGDFDVGAKPNKFFFNVETSGSLRPERIILSGLSVLKKKLSDLQTQHSHEIAADVLAI 273
            MPYA+QP V+I+EL+DEN+KF +E+TDL++AN +RR+FI+EVP IAIDWVQI+ N+SVLHDEFIAHR+GLIPL  D+ V+ + YSRDCTC +FCPECSVEFTL+V+C ED TR +TSRDLIS +P+++PVTS+N+D+D +D  E +DI+I+KLRKGQEL+LRAYAKKGFGKEHAKWNPTAGVAFEYDPDN +RHT YP+PEEWPKSEYS+LDED++Q  +D   KP +F++NVE+ GSLRPE I+LS LS LKKKLSDLQTQ SHEI +DVL I
Sbjct:    1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHEIQSDVLTI 274
The following BLAST results are available for this feature:
BLAST of TCONS_00049502-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPB31.425e-15370.80DNA-directed RNA polymerase II subunit RPB3 OS=Hom... [more]
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