TCONS_00049503-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00049503-protein
Unique NameTCONS_00049503-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length598

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00049503-protein ID=TCONS_00049503-protein|Name=TCONS_00049503-protein|organism=Clytia hemisphaerica|type=polypeptide|length=598bp
QKMLNHHHENAESALPPTQPAPRVRRCSYSQVDFIERYDAEQQQQRNEKT
RGLIVHETFLKLKEMNNELDRHLFLDDYIAFMVNTGDTEITQKIPIVGKK
LLDLVDLYRLVQKHGGFEKVCQKRQLSAVVRELNLPKTITSAANTLRNQF
ARFLYRFECYQRGVRVNEQFLREQLDSPKPIKEQTPQIRPIKQEDFYYMN
EKQKTRGVDEMHPAFPQYYAQHPENPLLRLSSQPLPRDTVAQRSTSISPP
VLKRPRSTEIQRRKSYENELAQLEEERSKSVDEIYSIDRLVKRRRLSYEK
EGGENIRAERMPSKEEEESVWAANHEQSRPPSTFKRSPTPEDRNETITHD
KERSISPSNEDREEREKSDNEEEQQQRFQSDKERERYEERKSPYDETWRI
NNTPPIHPPPPSSFEHHRTSFTSMATEHNNQRQMAARYHHQRPDYATQRK
YLQSVVTSGRHSSSAHLHAPYPEKCHCDDCVQKSYYMMRANRGKPGYIQP
PKTIHDKERPPRLPYNHVRPFINTRDFEPKETRFSSEHTKPYHRLPNDYR
GSSNAVKLSTNPTEMNLNIKERTENALVISVVVDGIYYSGTLLTNIKR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031402XLOC_031402Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00049503TCONS_00049503Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001606ARID_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 256..283
NoneNo IPR availableCOILSCoilCoilcoord: 370..390
NoneNo IPR availableSMARTSM01014ARID_2coord: 65..158
e-value: 4.1E-24
score: 96.1
NoneNo IPR availableGENE3D1.10.150.60coord: 31..214
e-value: 5.2E-27
score: 93.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 530..555
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 237..265
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 493..518
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 305..417
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
IPR001606ARID DNA-binding domainSMARTSM00501bright_3coord: 69..163
e-value: 6.4E-25
score: 98.8
IPR001606ARID DNA-binding domainPFAMPF01388ARIDcoord: 71..158
e-value: 1.2E-15
score: 57.8
IPR001606ARID DNA-binding domainPROSITEPS51011ARIDcoord: 68..162
score: 24.462
IPR001606ARID DNA-binding domainSUPERFAMILY46774ARID-likecoord: 57..167

Blast
[Close]
BLAST of TCONS_00049503-protein vs. Swiss-Prot (Human)
Match: ARI3A (AT-rich interactive domain-containing protein 3A OS=Homo sapiens GN=ARID3A PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 3.837e-20
Identity = 50/121 (41.32%), Postives = 73/121 (60.33%), Query Frame = 0 
Query:   57 ETFLKLKEMNNELDRHLFLDDYIAFMVNTGDTEITQKIPIVGKKLLDLVDLYRLVQKHGGFEKVCQKRQLSAVVRELNLPKTITSAANTLRNQFARFLYRFECYQRGVRVNEQFLREQLDS 177
            E F +L E++ +  R  FLDD  +FM   G      +IPI+ K++LDL  LY LV + GG  +V  K+    + + LNLP +ITSAA TLR Q+ ++LY +EC +RG+  N   L+  +DS
Sbjct:  227 EQFKQLYELDGDPKRKEFLDDLFSFMQKRGTP--VNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLS-NPNELQAAIDS 344
The following BLAST results are available for this feature:
BLAST of TCONS_00049503-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARI3A3.837e-2041.32AT-rich interactive domain-containing protein 3A O... [more]
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