TCONS_00049518-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00049518-protein
Unique Name	TCONS_00049518-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	482

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00049518-protein ID=TCONS_00049518-protein|Name=TCONS_00049518-protein|organism=Clytia hemisphaerica|type=polypeptide|length=482bp
MQPHKILINDQEEDYEAPSISGPSDTISTSSDHKPPSSPESATFFNSKSL
NNATIWLKTGAKSLAKKCRIVDDTDDGKTNLIQSIFNLINANLGTGILAM
PFVIRLGGYWGILITIVVGILGNYTGKMLINLLYEETADGQRVRVRDSYA
DIGEEFSPRFGRLMVHIINCIEQFSHCVLLLIMPGTVIAHTFPKSGMSES
TWIFLLSLIIIPTILVRKMHQVTWTCIVSVCIATVISLFVLGYSLMNHPS
WDSEIMPSFNPNITPISFGIVMVTYSSQAYLPSIERCMREPESFDLLMDF
SYTVVTIFKCVIGIIVFLAFTFHTEQIMTLNLPYNLFGYLINISAIILSL
SFYTVPMFAVFDILENQILLPRGFDKVLDTETKYVKYLTPNLLFRLCIVM
LFITIAAAVPHFSLLMSFVGNTTGTILVLLYPCLFSIKIRWNVMSNTEVV
TNSLIICFALFSGVFGVTSDARAFYSVFNKAD

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_031413	XLOC_031413	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00049518	TCONS_00049518	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013057	AA_transpt_TM

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013057	Amino acid transporter, transmembrane domain	PFAM	PF01490	Aa_trans	coord: 78..465 e-value: 1.6E-54 score: 185.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45

Blast

[Close]

BLAST of TCONS_00049518-protein vs. Swiss-Prot (Human)
Match: VIAAT (Vesicular inhibitory amino acid transporter OS=Homo sapiens GN=SLC32A1 PE=2 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 1.849e-52
Identity = 113/384 (29.43%), Postives = 202/384 (52.60%), Query Frame = 0

Query:   59 TGAKSLAKKCRIVDDTDDGKTNLIQSIFNLINANLGTGILAMPFVIRLGGYWGILITIVVGILGNYTGKMLINLLYEETADGQRVRVRDSYADIGEE-FSPRF---GRLMVHIINCIEQFSHCVLLLIMPGTVIAHTFPKSGMSESTWIFLLSLIIIPTILVRKMHQVTWTCIVSVCIATVISLFVLGYSLMNHPSWDSEIMPSF-NPNITPISFGIVMVTYSSQAYLPSIERCMREPESFDLLMDFSYTVVTIFKCVIGIIVFLAFTFHTEQIMTLNLPYNLFGYLINISAIILSLSFYTVPMFAVFDILENQILLP--RGFDKVLDTETKYVKYLTPNLLFRLCIVMLFITIAAAVPHFSLLMSFVGNTTGTILVLLYPCLF 435
            +G+K            D  K    ++ +N+ NA  G  +L +P+ I  GGY G+ + I   ++  YTGK+LI  LYEE  DG+ VRVRDSY  I     +PRF   G  +V++   IE    C+L +++ G ++ ++FP   +S+ +W  + + +++P   ++ +  V+   ++      VI++ V+ Y L     W  E +  + +    PIS GI++ +Y+SQ +LPS+E  M++P  F  +M++++    + K +  ++ +L +   T++++T NLP ++   ++NI  +  +L  Y +P FA  ++LE  +     R F     +    +K  +  L  R  +V+  + +A  VPHF+LLM   G+ TG  L  L P LF
Sbjct:   96 SGSKDQVGGGGEFGGHDKPKITAWEAGWNVTNAIQGMFVLGLPYAILHGGYLGLFLIIFAAVVCCYTGKILIACLYEENEDGEVVRVRDSYVAIANACCAPRFPTLGGRVVNVAQIIELVMTCILYVVVSGNLMYNSFPGLPVSQKSWSIIATAVLLPCAFLKNLKAVSKFSLLCTLAHFVINILVIAYCLSRARDWAWEKVKFYIDVKKFPISIGIIVFSYTSQIFLPSLEGNMQQPSEFHCMMNWTHIAACVLKGLFALVAYLTWADETKEVITDNLPGSIRA-VVNIFLVAKALLSYPLPFFAAVEVLEKSLFQEGSRAFFPACYSGDGRLK--SWGLTLRCALVVFTLLMAIYVPHFALLMGLTGSLTGAGLCFLLPSLF 476

The following BLAST results are available for this feature:

BLAST of TCONS_00049518-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00049518-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
VIAAT	1.849e-52	29.43	Vesicular inhibitory amino acid transporter OS=Hom...	[more]

You are here

TCONS_00049518-protein (polypeptide) - C. hemisphaerica