TCONS_00049555-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00049555-protein
Unique NameTCONS_00049555-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length391

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00049555-protein ID=TCONS_00049555-protein|Name=TCONS_00049555-protein|organism=Clytia hemisphaerica|type=polypeptide|length=391bp
GPSNNFFVTCIFIDSSKKDHDDHHPIEFADDASENNDLQHQFAELVNGLE
LPDEYCDQLKAATLQQKWILLKGKESVREGRHSVQFYMNQLCRHLDPQLR
TKSPSKKLLKGLISIESLLTSLEVDLRSNPNATWLREFIDEPNCGHVVLL
RFLKYLQDHSSPVAMANSLERANNYKNKKTDALLSREPNDEHLCLLCLKA
IVRNKYGFHKVLSAPRSLATMTYCLRLSNVKTKIAVLRILSEACDHGGGF
DKALQAFEDYKQIKKERYRFESLVHSVILKGKQSTPTYQEVVVHFFNALL
SNAPSLNQRVFHQQELEQAGFTAERVEQTLEGLSSEGIYDELSKWRNNYI
DVSTTLDEFVSMKSRSTMLRDEVDLLQGKVEQFQRERNTLQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031427XLOC_031427Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00049555TCONS_00049555Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010472FH3_dom
IPR010473GTPase-bd
IPR011989ARM-like
IPR014768GBD/FH3_dom
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0003779actin binding
GO:0017048Rho GTPase binding
GO:0005488binding
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0030036actin cytoskeleton organization
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030036 actin cytoskeleton organization
biological_process GO:0016043 cellular component organization
molecular_function GO:0003779 actin binding
molecular_function GO:0005488 binding
molecular_function GO:0017048 Rho GTPase binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 366..391
IPR010472Formin, FH3 domainSMARTSM01139Drf_FH3_2coord: 248..391
e-value: 2.8E-4
score: 25.0
IPR010472Formin, FH3 domainPFAMPF06367Drf_FH3coord: 249..377
e-value: 1.1E-9
score: 38.1
IPR010473Formin, GTPase-binding domainSMARTSM01140Drf_GBD_2coord: 30..245
e-value: 6.2E-26
score: 102.2
IPR010473Formin, GTPase-binding domainPFAMPF06371Drf_GBDcoord: 34..244
e-value: 4.4E-21
score: 75.2
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 105..357
e-value: 3.1E-39
score: 134.0
IPR014768Rho GTPase-binding/formin homology 3 (GBD/FH3) domainPROSITEPS51232GBD_FH3coord: 30..391
score: 15.69
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 39..361

Blast
[Close]
BLAST of TCONS_00049555-protein vs. Swiss-Prot (Human)
Match: FMNL2 (Formin-like protein 2 OS=Homo sapiens GN=FMNL2 PE=1 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 1.204e-28
Identity = 98/392 (25.00%), Postives = 184/392 (46.94%), Query Frame = 0 
Query:   13 IDSSKKDHDDHH-PIEFADDASENNDLQHQFAELVNGLELPDEYCDQLKAATLQQKWILLKGKE--SVREGRHSVQFYMNQLCRHLDPQLRTKSPSKKLLKGLISIESLLTSLEVDLRSNPNATWLREFIDEPNCGHVVLLRFLKYLQ------------------DHSSPVA---------------MANSLERANNYKNKKTDALLSR----------EPNDEHLCLLCLKAIVRNKYGFHKVLSAPRSLATMTYCLRLSNVKTKIAVLRILSEACDHGGGFDKALQAFEDYKQIKKERYRFESLVHSVILKGKQSTPTYQEVVVHFFNALLSNAPSLNQRVFHQQELEQAGFTAERVEQTLEGLSSEGIYDELSKWRNNYIDVSTTLDE 358
            +DS + D   H+ P++      E  +L+ +FA ++N + LP +    L+    ++KW L+  +E   V+   H+   Y+ +L  +LDP +      KK  + +     +L  LE+ LR+N +  W+REF++E N G  VL+ +L + Q                  D S P +               + NS+ R+  +   + + L SR          + +D H+C++CL+AI+  +YGF+ V+S P ++  +   L   N +TK  VL +L+  C   GG +  L AF+++K++  E+ RFE L+     + + +   +    + F N ++ +   +N RV  Q E  + G   +     L+   S+ +  ++  + +N  DV   L++
Sbjct:    7 MDSQQTDFRAHNVPLKLP--MPEPGELEERFAIVLNAMNLPPDKARLLRQYDNEKKWELICDQERFQVKNPPHT---YIQKLKGYLDPAV----TRKKFRRRVQESTQVLRELEISLRTN-HIGWVREFLNEENKGLDVLVEYLSFAQYAVTFDFESVESTVESSVDKSKPWSRSIEDLHRGSNLPSPVGNSVSRSGRHSALRYNTLPSRRTLKNSRLVSKKDDVHVCIMCLRAIMNYQYGFNMVMSHPHAVNEIALSLNNKNPRTKALVLELLAAVCLVRGGHEIILSAFDNFKEVCGEKQRFEKLMEH--FRNEDNNIDFMVASMQFINIVVHSVEDMNFRVHLQYEFTKLGL--DEYLDKLKHTESDKLQVQIQAYLDNVFDVGALLED 384
The following BLAST results are available for this feature:
BLAST of TCONS_00049555-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FMNL21.204e-2825.00Formin-like protein 2 OS=Homo sapiens GN=FMNL2 PE=... [more]
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