TCONS_00049568-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00049568-protein
Unique Name	TCONS_00049568-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	411

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00049568-protein ID=TCONS_00049568-protein|Name=TCONS_00049568-protein|organism=Clytia hemisphaerica|type=polypeptide|length=411bp
MSVMLGFKDEAVKTKDFVDWSCNKFGGKADWMINCASEMIVQPQCKKCGN
PMYLLVQIYCPLVNSVYHRTLYVYGCSQTGCWNDPESFSVIRCQKKEVKE
KEQKETKIETDDWGTNDWGANETDDNKEEDEKQEDENTGGDVSQEELSMD
DLIQKMSQSLSISTSTTSKLQNTPPHSFVPYHIYVMNEKDAVRESSVTSN
DYEMQLYQEYVDREGELQANHQNNNNKSSGKNKTSRGSTDGDCHYEKTKV
KHGDSAFYQFSKQIRPCPQQCLRYDWQGTPLILSDCSKITPPLNAIPPCQ
KCGAVRVFEMQLMPNLVTCLHKTKITIGSNSKQHSSATNGHHELNSLATN
GHHIDKEDEITWTAHAQAGMSIDFGCLYIFTCSQSCWRDNDDVICLEVVA
MQPDPETAVLS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_031438	XLOC_031438	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00049568	TCONS_00049568	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007320	PDCD2_C

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007320	Programmed cell death protein 2, C-terminal	PFAM	PF04194	PDCD2_C	coord: 179..402 e-value: 5.3E-35 score: 120.9
None	No IPR available	GENE3D	2.30.320.10		coord: 11..390 e-value: 2.6E-11 score: 43.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..146
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 220..242

Blast

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BLAST of TCONS_00049568-protein vs. Swiss-Prot (Human)
Match: PDD2L (Programmed cell death protein 2-like OS=Homo sapiens GN=PDCD2L PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.510e-51
Identity = 126/422 (29.86%), Postives = 186/422 (44.08%), Query Frame = 0

Query:    3 VMLGFKDEAVKTKDFVD--WSCNKFGGKADWMINCASEMIVQPQCKKCGNPMYLLVQIYCPLVNSVYHRTLYVYGCSQTGC-WNDPESFSVIRCQKKEVKEKEQKETK-----IETDDW--GTNDWGANETDDNKEEDEKQEDENTGGDVSQEELSMDDLIQKMSQSLSISTSTTSKLQNTPPHS--FVPYHIYVMNEKDAVRESSVTSNDYEMQLYQEYVDREGEL--QANHQNNNNKSSGKNKTSRGSTDGDCHYEKTKVKHGDSAFYQFSKQIRPCPQQCLRYDWQGTPLILSDCSKITPPLNAIPPCQKCGAVRVFEMQLMPNLVTCLHKTKITIGSNSKQHSSATNGHHELNSLATNGHHIDKEDEITWTAHAQAGMSIDFGCLYIFTCSQSCWRDNDDVICLEVVAMQPDPETAVL 410
            V+LG +D  V         W+ +K GG  D +   A+    +P C++CG P+ L+VQ+YCPL  S +HR L+V+ C+  GC      S+ V R Q  +V E+E ++ +     +  +DW  G +DWG+    D +E    Q   + G D S  +   D       Q L +  +        PP    F+PY+I V +E D        + D+   L ++Y  REG    Q   Q+  N             DGD  YEKT +K GD  FY+F K+I  C +Q LRY W G PL L+ C   T  +  +P C +CG  R+FE QLMP LV+ L    +                                           G+S++FG + ++TC +SCW  N      E   +Q DP+  + 
Sbjct:    8 VLLGLRDAPVHGSPTGPGAWTASKLGGIPDALPTVAAP---RPVCQRCGQPLALVVQVYCPLEGSPFHRLLHVFACACPGCSTGGARSWKVFRSQCLQVPEREAQDAQKQGNSLAAEDWCEGADDWGS----DTEEGPSPQFTLDFGNDASSAK---DVDWTARLQDLRLQDAVLGAAHPVPPGLPLFLPYYICVADEDDY---RDFVNLDHAHSLLRDYQQREGIAMDQLLSQSLPN-------------DGDEKYEKTIIKSGDQTFYKFMKRIAACQEQILRYSWSGEPLFLT-CP--TSEVTELPACSQCGGQRIFEFQLMPALVSMLKSANL-------------------------------------------GLSVEFGTILVYTCEKSCWPPNHQTPMEEFCIIQEDPDELLF 357

The following BLAST results are available for this feature:

BLAST of TCONS_00049568-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00049568-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PDD2L	2.510e-51	29.86	Programmed cell death protein 2-like OS=Homo sapie...	[more]

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TCONS_00049568-protein (polypeptide) - C. hemisphaerica