TCONS_00050168-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00050168-protein
Unique Name	TCONS_00050168-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	509

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00050168-protein ID=TCONS_00050168-protein|Name=TCONS_00050168-protein|organism=Clytia hemisphaerica|type=polypeptide|length=509bp
MAKFVIAGKSDCPFYARAELLADELTLKLPNFNVHKIVLSPSEWKDWVKS
TCSEKGWNYSGQSPIIWRELINRGGKGTLLGSCNDFLEYAKGYYGITCKN
PTPDLNIISGENKTTKEQNEEETEQLNAAINPFKIAITSADTDVAYHALP
LMIRQDIFGEKQEVSISLHYNDNSENVQEKINGLVMELQDCAELEVREIT
ATSVLKDSFQNADFIVILNTTKEMDRSAVSQLQKIASNLKKCLNNTTKML
VIGENAIICSNIIHYFLNGIQRKNLMAMTRFEENIGKSAVAKVLDVNSAG
VKNLILWGSSKEYITDYSIATAQGYNGAIWAPHINKFSHSVSEIIYNKKF
LDNELPEKLNDEKLHLTSHKLSFTAAFISQLQDLLSQADKKNEIYSLGVI
SDGSFGIPDGLIYSFPVKYTKDGLTIQTKITCDQIIAENIKRTAEELQDY
CDDAIALVDPSVLKRKESRANKRAKAVPDNLENLTENGTENIPTDTDTKN
PTTEPTQEE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_031773	XLOC_031773	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00050168	TCONS_00050168	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR016040	NAD(P)-bd_dom
IPR015955	Lactate_DH/Glyco_Ohase_4_C

Vocabulary: **Biological Process**
Term	Definition
GO:0005975	carbohydrate metabolic process
GO:0055114	oxidation-reduction process

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity
GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0055114	oxidation-reduction process
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.720		coord: 106..289 e-value: 9.8E-4 score: 18.8
None	No IPR available	GENE3D	3.90.110.10		coord: 290..459 e-value: 2.7E-16 score: 59.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 468..509
IPR016040	NAD(P)-binding domain	SUPERFAMILY	51735	NAD(P)-binding Rossmann-fold domains	coord: 118..277
IPR015955	Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal	SUPERFAMILY	56327	LDH C-terminal domain-like	coord: 280..458

Blast

[Close]

BLAST of TCONS_00050168-protein vs. Swiss-Prot (Human)
Match: MDH1B (Putative malate dehydrogenase 1B OS=Homo sapiens GN=MDH1B PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.303e-67
Identity = 157/505 (31.09%), Postives = 258/505 (51.09%), Query Frame = 0

Query:    1 MAKFVIAGKSDCPFYARAELLADELTLKLPNFNVHKIVLSPSEWKDWVKSTCSEKGWNYSGQSPIIWRELINRGGKGTLLGSCNDFLEYAKGYYGITCKNPTPDLNIISGENKTTKEQNEEETEQLNAAINPFKIAITSADTDVAYHALPLMIRQDIFGEKQEVSISLHYNDNSENVQEKINGLVMELQDCAELEVREITATSVLKDSFQNADFIVILN--------TTKEMDRSAVSQLQKIASNLKKCLNNTTKMLVIGENAIICSNIIHYFLNGIQRKNLMAMTRFEENIGKSAVAKVLDVNSAGVKNLILWG--SSKEYITDYSIATAQGYNGAIWAPHINKFSHSVSEIIYNKKFLDNELPEKLNDEKLHLTSHKLS--FTAAFISQLQDLLSQADKKNEIYSLGVISDGSFGIPDGLIYSFPVKYTKDGLTIQTKITCDQIIAENIKRTAEELQDYCDDAIALVDPSVLKRKESRANKRAKAVPDNLENLTENGTENIP 493
            MAKFVIAG++DCP+YA+ EL+AD L   LP+F +HKI   P  W+DW+K  C +  W++   SPIIWREL++RGGKG LLG  N+FLE+A+ YY +T    T  + +I+ EN     + E+E E L   INP ++ ITSA     Y+ +P++   ++FG   E+SI+L  N  +E   E +  LV+E QD A   +R ++  + ++++F+ A  IV+L+        T ++  RS V   +     ++K  + + +++V G   +    ++          N++A+    E   K+ +A+ L    + +K++I+WG  S   Y+ D        Y  AIW P    +S  V  +I++ +++  E    L +  L  T  +      A  I+             EI SLG++S+G FGIP G+++S PVK+      + T +   +I  + + R   +L    +  +AL D    +  +S        VPD  +NL  +     P
Sbjct:    1 MAKFVIAGRADCPYYAKTELVADYLQKNLPDFRIHKITQRPEVWEDWLKDVCEKNKWSHKN-SPIIWRELLDRGGKGLLLGGYNEFLEHAQLYYDVTSSMTTELMMVIAQENLGAHIEKEQEEEALKTCINPLQVWITSASAPACYNLIPILTSGEVFGMHTEISITLFDNKQAE---EHLKSLVVETQDLASPVLRSVSICTKVEEAFRQAHVIVVLDDSTNKEVFTLEDCLRSRVPLCRLYGYLIEKNAHESVRVIVGGRTFVNLKTVLLMRYAPRIAHNIIAVALGVEGEAKAILARKLKTAPSYIKDVIIWGNISGNNYV-DLRKTRVYRYESAIWGPL--HYSRPVLNLIFDSEWVKREFVAILKN--LTTTGRQFGGILAAHSIATTLKYWYHGSPPGEIVSLGILSEGQFGIPKGIVFSMPVKFENGTWVVLTDLKDVEISEQIMTRMTSDLIQ--EKLVALGDKIHFQPYQS---GHKDLVPDEEKNLAMSDAAEFP 491

The following BLAST results are available for this feature:

BLAST of TCONS_00050168-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00050168-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MDH1B	1.303e-67	31.09	Putative malate dehydrogenase 1B OS=Homo sapiens G...	[more]

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TCONS_00050168-protein (polypeptide) - C. hemisphaerica