TCONS_00050206-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00050206-protein
Unique NameTCONS_00050206-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length436

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00050206-protein ID=TCONS_00050206-protein|Name=TCONS_00050206-protein|organism=Clytia hemisphaerica|type=polypeptide|length=436bp
MYDKEFFKESLVAAKAVHGLDFELKQEQEELLFAFLNGKDCIGVLPTNFG
KSMIYQLAPSVHDDMARRTDEMVAILQGDSMLIVVSPTNALIDDQIESCE
RLGITARKLCSEEIDDINEYAGEITLLYSSPECLLEEKFRTFLLDKFQER
IIGIVIDEAHLVVKWGTSNKPDDDPFREAFKHLGQLRGYFSKPFLCLTAT
ANRKTRKNITKILGLKRPHVTKVTPEKPNIMLNVIKVKSIEEFMETPMLI
EILEKLRSQPETCEKTIIYCHSYNACGLVYLKIKSQFPRGFDLTLFVEIF
HGTTPVPIQNEVLADIVKDGSTTRIIIATNALGVGVNIKNIRNIVHWGVP
SDIEGYVQEIGRAGRDQKNSKATLIYKGNDITHCRDKDLVNYIKNVEKEC
RRKLLMSFFNCDYTPSKEKHLCCDVCSQTCNCNSCF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031810XLOC_031810Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00050206TCONS_00050206Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014001Helicase_ATP-bd
IPR001650Helicase_C
IPR011545DEAD/DEAH_box_helicase_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 20..243
e-value: 1.0E-14
score: 64.9
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 32..219
score: 17.262
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 281..367
e-value: 2.8E-13
score: 60.1
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 252..365
e-value: 8.2E-16
score: 58.3
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 248..422
score: 15.822
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 28..205
e-value: 8.4E-10
score: 38.6
NoneNo IPR availableGENE3D3.40.50.300coord: 4..224
e-value: 3.8E-21
score: 74.9
NoneNo IPR availableGENE3D3.40.50.300coord: 227..430
e-value: 8.5E-27
score: 93.4
NoneNo IPR availableCDDcd00046DEXDccoord: 39..200
e-value: 1.99612E-6
score: 45.0208
NoneNo IPR availableCDDcd00079HELICccoord: 249..375
e-value: 6.52682E-15
score: 69.9592
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 82..382

Blast
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BLAST of TCONS_00050206-protein vs. Swiss-Prot (Human)
Match: BLM (Bloom syndrome protein OS=Homo sapiens GN=BLM PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.622e-37
Identity = 128/443 (28.89%), Postives = 200/443 (45.15%), Query Frame = 0 
Query:   24 LKQEQEELLFAFLNGKDCIGVLPTNFGKSMIYQLAPSVHDDMARRTDEMVAILQGDSMLIVVSPTNALIDDQIESCERLGITARKLCSEEIDD--------INEYAGEITLLYSSPECLLEEKFRTFLLDKFQER--IIGIVIDEAHLVVKWGTSNKPDDDPFREAFKHLGQLRGYF-SKPFLCLTATANRKTRKNITKILGLKRPHVTKVTPEKPNIMLNVIKVKSIEEFMETPMLIEILEKLRSQPETCEKTIIYCHSYNACGLVYLKIKSQFPRGFDLTLFVEIFHGTTPVPIQNEVLAD-IVKDGSTTRIIIATNALGVGVNIKNIRNIVHWGVPSDIEGYVQEIGRAGRDQKNSKATLIYKGNDIT--------------HCRDK------DLVNYIKNVEKECRRKLLMSF-----FNCDYTPSKEKHLCCDVCSQT 429
             +  Q E + A L G+DC  ++PT  GKS+ YQL   V                   + +V+SP  +LI DQ++    L I A  L  ++ D         +++    I LLY +PE +         L+   ER  +   VIDEAH V +WG         FR+ +K +  LR  F S P + LTATAN + +K+I   L + RP V  ++  + N+   V+  K  +      +  + LE +R      +  IIYC S   C  +   ++          L    +H       ++EV    I +DG   ++I AT A G+G++  ++R ++H  +P  +EGY QE GRAGRD + S   L Y  +D+T              H R+        +V+Y +N+  ECRR  L+++     FN D+   K   + CD C +T
Sbjct:  668 FRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACV----------------SPGVTVVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHD-------FRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKK------VAFDCLEWIRKH-HPYDSGIIYCLSRRECDTMADTLQRD-------GLAALAYHAGLSDSARDEVQQKWINQDG--CQVICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDGNHHTRETHFNNLYSMVHYCENI-TECRRIQLLAYFGENGFNPDFC-KKHPDVSCDNCCKT 1069
The following BLAST results are available for this feature:
BLAST of TCONS_00050206-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BLM5.622e-3728.89Bloom syndrome protein OS=Homo sapiens GN=BLM PE=1... [more]
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