TCONS_00050266-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00050266-protein
Unique NameTCONS_00050266-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length514

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00050266-protein ID=TCONS_00050266-protein|Name=TCONS_00050266-protein|organism=Clytia hemisphaerica|type=polypeptide|length=514bp
FIVKINKMVLADLGRKITSALKSLSNATVINEEVLNAMLKEICAALLEAD
VNVQLVKKLRINIKTAANFEEMAAGTNKRRLIQHTVFQELCKLVDPGVKQ
WQPSKGKNNVIMFVGLQGSGKTTTCTKLAYYYQRKGWKTCLICADTFRAG
AFDQLKQNALKARIPYYGSYSEADPAIIAADGVEKFKNENFEIIIVDTSG
RHKQQESLFEEMLQVSNAVDPDNIIFVMDASIGQACEAQARAFKEKVDVA
SVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHTDDFESFKTQPFISK
LLGMGDIEGLIDKVNELKLDENEELIDKLKQGVFTLRDMYEQFQNIMKMG
PFSQIMGMIPGFSNDFISKGNEQESVARLKRLMTMMDSMNDTELDSPNGA
KLFTKQPGRLTRIARGSGVSTREVQELLTQYQKFAQMVKKMGGIKGLFKG
GDMAKNVNPSQMGKLNAQMAKMMDPRVLHQLGGMGGLQNMMKQFQGASGQ
MGGPGQGPSKGRKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031835XLOC_031835Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00050266TCONS_00050266Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013822Signal_recog_particl_SRP54_hlx
IPR000897SRP54_GTPase_dom
IPR003593AAA+_ATPase
IPR004125Signal_recog_particle_SRP54_M
IPR006325SRP54_euk
IPR022941SRP54
IPR027417P-loop_NTPase
Vocabulary: Biological Process
TermDefinition
GO:0006614SRP-dependent cotranslational protein targeting to membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:00083127S RNA binding
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0048500signal recognition particle
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006614 SRP-dependent cotranslational protein targeting to membrane
cellular_component GO:0048500 signal recognition particle
molecular_function GO:0008312 7S RNA binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013822Signal recognition particle, SRP54 subunit, helical bundleSMARTSM00963SRP54_N_2coord: 9..94
e-value: 3.1E-18
score: 76.6
IPR013822Signal recognition particle, SRP54 subunit, helical bundlePFAMPF02881SRP54_Ncoord: 13..90
e-value: 6.1E-20
score: 71.1
IPR013822Signal recognition particle, SRP54 subunit, helical bundleSUPERFAMILY47364Domain of the SRP/SRP receptor G-proteinscoord: 7..100
IPR000897Signal recognition particle, SRP54 subunit, GTPase domainSMARTSM00962SRP54_3coord: 108..303
e-value: 2.3E-91
score: 319.5
IPR000897Signal recognition particle, SRP54 subunit, GTPase domainPFAMPF00448SRP54coord: 109..303
e-value: 3.3E-77
score: 258.5
IPR000897Signal recognition particle, SRP54 subunit, GTPase domainPROSITEPS00300SRP54coord: 276..289
IPR003593AAA+ ATPase domainSMARTSM00382AAA_5coord: 107..284
e-value: 2.3E-7
score: 40.5
IPR004125Signal recognition particle, SRP54 subunit, M-domainPFAMPF02978SRP_SPBcoord: 334..438
e-value: 2.3E-30
score: 105.1
IPR004125Signal recognition particle, SRP54 subunit, M-domainGENE3D1.10.260.30coord: 334..442
e-value: 1.7E-39
score: 133.9
IPR004125Signal recognition particle, SRP54 subunit, M-domainSUPERFAMILY47446Signal peptide-binding domaincoord: 305..442
NoneNo IPR availableGENE3D1.20.120.140coord: 8..99
e-value: 3.5E-27
score: 93.8
NoneNo IPR availableGENE3D3.40.50.300coord: 103..262
e-value: 1.8E-36
score: 124.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 495..514
IPR006325Signal recognition particle, SRP54 subunit, eukaryoticTIGRFAMTIGR01425TIGR01425coord: 9..437
e-value: 4.1E-229
score: 758.6
IPR022941Signal recognition particle, SRP54 subunitHAMAPMF_00306SRP54coord: 13..473
score: 35.803
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 102..305

Blast
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BLAST of TCONS_00050266-protein vs. Swiss-Prot (Human)
Match: SRP54 (Signal recognition particle 54 kDa protein OS=Homo sapiens GN=SRP54 PE=1 SV=1)

HSP 1 Score: 884.404 bits (2284), Expect = 0.000e+0
Identity = 417/497 (83.90%), Postives = 464/497 (93.36%), Query Frame = 0 
Query:    8 MVLADLGRKITSALKSLSNATVINEEVLNAMLKEICAALLEADVNVQLVKKLRINIKTAANFEEMAAGTNKRRLIQHTVFQELCKLVDPGVKQWQPSKGKNNVIMFVGLQGSGKTTTCTKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNALKARIPYYGSYSEADPAIIAADGVEKFKNENFEIIIVDTSGRHKQQESLFEEMLQVSNAVDPDNIIFVMDASIGQACEAQARAFKEKVDVASVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHTDDFESFKTQPFISKLLGMGDIEGLIDKVNELKLDENEELIDKLKQGVFTLRDMYEQFQNIMKMGPFSQIMGMIPGFSNDFISKGNEQESVARLKRLMTMMDSMNDTELDSPNGAKLFTKQPGRLTRIARGSGVSTREVQELLTQYQKFAQMVKKMGGIKGLFKGGDMAKNVNPSQMGKLNAQMAKMMDPRVLHQLGGMGGLQNMMKQF-QGASGQMGG 503
            MVLADLGRKITSAL+SLSNAT+INEEVLNAMLKE+C ALLEADVN++LVK+LR N+K+A + EEMA+G NKR++IQH VF+EL KLVDPGVK W P+KGK NVIMFVGLQGSGKTTTC+KLAYYYQRKGWKTCLICADTFRAGAFDQLKQNA KARIP+YGSY+E DP IIA++GVEKFKNENFEIIIVDTSGRHKQ++SLFEEMLQV+NA+ PDNI++VMDASIGQACEAQA+AFK+KVDVASVI+TKLDGHAKGGGALSAVAATKSPIIFIGTGEH DDFE FKTQPFISKLLGMGDIEGLIDKVNELKLD+NE LI+KLK G FTLRDMYEQFQNIMKMGPFSQI+GMIPGF  DF+SKGNEQES+ARLK+LMT+MDSMND ELDS +GAK+F+KQPGR+ R+ARGSGVSTR+VQELLTQY KFAQMVKKMGGIKGLFKGGDM+KNV+ SQM KLN QMAKMMDPRVLH +GGM GLQ+MM+QF QGA+G M G
Sbjct:    1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGLQSMMRQFQQGAAGNMKG 497
The following BLAST results are available for this feature:
BLAST of TCONS_00050266-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SRP540.000e+083.90Signal recognition particle 54 kDa protein OS=Homo... [more]
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