TCONS_00050286-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00050286-protein
Unique NameTCONS_00050286-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length292

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00050286-protein ID=TCONS_00050286-protein|Name=TCONS_00050286-protein|organism=Clytia hemisphaerica|type=polypeptide|length=292bp
LLCQRHKCVFAQFSIQYKSLFRCYLFNDVDDVISKLSERKGSQLFMVFNE
PDLSQQVQKPMDHHLSTTTSNRSECLDWYEKGHHGNDVYSHMIAGKATQA
YCIMEDQAGYGGGWTAFQRRTDAQTPFSQGWEKYKNGFGEVGKNHWLGLE
QIHRFTKSRATTELLICGKRFNGEERCAHFEGFAVGDEASEYKLKSGYPT
NLASRNLGKSWSGMDGVPFSTLDSDNDYQSTNCAAIFPSGWWMRNCFAIN
LNGLYRASPGTVTQSAVGIVWNEWRGYKESLKETKMLMRRKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031843XLOC_031843Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00050286TCONS_00050286Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014715Fibrinogen_a/b/g_C_2
IPR014716Fibrinogen_a/b/g_C_1
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 281..292
IPR002181Fibrinogen, alpha/beta/gamma chain, C-terminal globular domainSMARTSM00186FBG_2coord: 70..291
e-value: 6.1E-45
score: 165.3
IPR002181Fibrinogen, alpha/beta/gamma chain, C-terminal globular domainPFAMPF00147Fibrinogen_Ccoord: 73..289
e-value: 6.0E-50
score: 170.0
IPR002181Fibrinogen, alpha/beta/gamma chain, C-terminal globular domainPROSITEPS51406FIBRINOGEN_C_2coord: 66..292
score: 38.803
IPR002181Fibrinogen, alpha/beta/gamma chain, C-terminal globular domainSUPERFAMILY56496Fibrinogen C-terminal domain-likecoord: 67..290
IPR014715Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 2GENE3D4.10.530.10coord: 218..283
e-value: 7.5E-22
score: 76.8
IPR014716Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1GENE3D3.90.215.10coord: 31..217
e-value: 1.4E-42
score: 145.4

Blast
[Close]
BLAST of TCONS_00050286-protein vs. Swiss-Prot (Human)
Match: FBCD1 (Fibrinogen C domain-containing protein 1 OS=Homo sapiens GN=FIBCD1 PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 2.749e-40
Identity = 97/273 (35.53%), Postives = 135/273 (49.45%), Query Frame = 0 
Query:   23 CYLFNDVDDVISKLSERKGSQLFMVFNEPDLSQQVQKPMDHHLSTTTSNRSECLDWYEKGHHGNDVYS----HMIAGKATQAYCIMEDQAGYGGGWTAFQRRTDAQTPFSQGWEKYKNGFGEVGKNHWLGLEQIHRFTKSRATTELLICGKRFNGEERCAHFEGFAVGDEASEYKLKSGYPTNLA--SRNLGKSWSGMDGVPFSTLDSDNDYQSTNCAAIFPSGWWMRNCFAINLNGLYRASPGTVTQSAVGIVWNEWRGYKESLKETKMLMR 289
             +L N V D++  L   +G  L    N+ DL +   +        T S   +CLD    G   + VYS    H  AG   Q YC M      GGGWT FQRR D    F +GW+ Y++GFG +   HWLGL++IH  T ++A  EL +  + F      A +  F VG  + + + + GYP  +A  S   G S     G+ F+T D D+D+   NCAA +   WW RNC   NLNG Y    G     A G+ W+ W G++ SLK ++M +R
Sbjct:  194 AHLVNSVSDILDALQRDRG--LGRPRNKADLQRAPARGTRPRGCATGSRPRDCLDVLLSGQQDDGVYSVFPTHYPAG--FQVYCDMRTD---GGGWTVFQRREDGSVNFFRGWDAYRDGFGRLTGEHWLGLKRIHALT-TQAAYELHVDLEDFENGTAYARYGSFGVGLFSVDPE-EDGYPLTVADYSGTAGDSLLKHSGMRFTTKDRDSDHSENNCAAFYRGAWWYRNCHTSNLNGQYLR--GAHASYADGVEWSSWTGWQYSLKFSEMKIR 455
The following BLAST results are available for this feature:
BLAST of TCONS_00050286-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FBCD12.749e-4035.53Fibrinogen C domain-containing protein 1 OS=Homo s... [more]
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