TCONS_00050339-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00050339-protein
Unique NameTCONS_00050339-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length206

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00050339-protein ID=TCONS_00050339-protein|Name=TCONS_00050339-protein|organism=Clytia hemisphaerica|type=polypeptide|length=206bp
CHNLKKCPLKKNYSIFQTKITVKMANRPKGFGMTAELNRKKEAKFDPDLA
TDCFQWLKEVLNDGGKADLAASLPSVIGKSADVISPLKNGKILCEVINVI
KPGSVKKINENKMTFKEMENIGNFLAACEKIGCVKNDLFQTVDLYEGQNI
NQVINGIVSLGRKAQTIGYNGPCLGPTESTENKREFTDEQLKAGEGIIGL
QMEKFC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031871XLOC_031871Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00050339TCONS_00050339Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003096SM22_calponin
IPR001997Calponin/LIMCH1
IPR001715CH-domain
Vocabulary: Biological Process
TermDefinition
GO:0031032actomyosin structure organization
Vocabulary: Molecular Function
TermDefinition
GO:0003779actin binding
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0031032 actomyosin structure organization
molecular_function GO:0003779 actin binding
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003096Smooth muscle protein/calponinPRINTSPR00888SM22CALPONINcoord: 153..167
score: 31.37
coord: 132..147
score: 50.74
coord: 45..58
score: 21.43
coord: 116..132
score: 48.1
coord: 26..40
score: 33.73
coord: 186..199
score: 50.0
IPR001997Calponin/LIMCH1PRINTSPR00889CALPONINcoord: 94..111
score: 59.44
coord: 146..161
score: 33.12
IPR001715Calponin homology domainSMARTSM00033ch_5coord: 49..160
e-value: 1.2E-15
score: 68.0
IPR001715Calponin homology domainPFAMPF00307CHcoord: 52..165
e-value: 2.8E-18
score: 66.0
IPR001715Calponin homology domainGENE3D1.10.418.10coord: 38..206
e-value: 2.2E-31
score: 108.0
IPR001715Calponin homology domainPROSITEPS50021CHcoord: 47..164
score: 13.656
IPR001715Calponin homology domainCDDcd00014CHcoord: 55..165
e-value: 1.67512E-18
score: 76.5807
IPR001715Calponin homology domainSUPERFAMILY47576Calponin-homology domain, CH-domaincoord: 40..204

Blast
[Close]
BLAST of TCONS_00050339-protein vs. Swiss-Prot (Human)
Match: TAGL2 (Transgelin-2 OS=Homo sapiens GN=TAGLN2 PE=1 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 6.771e-32
Identity = 68/186 (36.56%), Postives = 101/186 (54.30%), Query Frame = 0 
Query:   24 MANRPKGFGMTAELNRKKEAKFDPDLATDCFQWLKEVLNDGGKADLAASLPSVIGKSADVISPLKNGKILCEVINVIKP---GSVKKINENKMTFKEMENIGNFLAACEKIGCVKNDLFQTVDLYEGQNINQVINGIVSLG----RKAQTIGYNGPCLGPTESTENKREFTDEQLKAGEGIIGLQM 202
            MANR   +G++ E+ +K E ++D DL     QW+        + D+    P       +  + LK+G +LCE+IN + P     VKKI  + M FK+ME I  FL A E+ G    D+FQTVDL+EG+N+  V   +++LG     +   +    P   P +S EN R F+D QL+ G+ +IGLQM
Sbjct:    1 MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQC----RKDVGRPQPG----RENFQNWLKDGTVLCELINALYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQM 178
The following BLAST results are available for this feature:
BLAST of TCONS_00050339-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TAGL26.771e-3236.56Transgelin-2 OS=Homo sapiens GN=TAGLN2 PE=1 SV=3[more]
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