TCONS_00050753-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00050753-protein
Unique Name	TCONS_00050753-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	168

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00050753-protein ID=TCONS_00050753-protein|Name=TCONS_00050753-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
RIHLESLLPNKMDKSNTSTTPCLQNHNSSRKILFWRILNCIMGIFFMVAM
GLQANDPDPAVWMLLYGITGAVSFSIVISPSLQGKRLWRIFVAVHFVCCL
AMLAYVIMFYSHVIDKSSNILHNEEGRELSGVILVQLWLAIILSVSIYHE
KIRECCGRSRESNNVQMA

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_032145	XLOC_032145	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00050753	TCONS_00050753	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR029377	TMEM220

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029377	TMEM220 protein	PFAM	PF15071	TMEM220	coord: 45..142 e-value: 4.2E-21 score: 75.6

Blast

[Close]

BLAST of TCONS_00050753-protein vs. Swiss-Prot (Human)
Match: TM220 (Transmembrane protein 220 OS=Homo sapiens GN=TMEM220 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.205e-16
Identity = 36/107 (33.64%), Postives = 64/107 (59.81%), Query Frame = 0

Query:   34 FWRILNCIMGIFFMVAMGLQANDPDPAVWMLLYGITGAVSFSIVISPSLQGKRLWRIFVAVHFVCCLAMLAYVIMFYSHVIDKS-SNILHNEEGRELSGVILVQLWL 139
             WR  N +M  FF +A  +Q NDPD  VW+++Y I   ++  + ++P + G  +W+   A+H + C     + +   S+++ ++  NILH EEGRELSG++++  W+
Sbjct:    5 LWRACNGLMAAFFALAALVQVNDPDAEVWVVVYTIPAVLTLLVGLNPEVTGNVIWKSISAIHILFC---TVWAVGLASYLLHRTQQNILHEEEGRELSGLVIITAWI 108

The following BLAST results are available for this feature:

BLAST of TCONS_00050753-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00050753-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TM220	1.205e-16	33.64	Transmembrane protein 220 OS=Homo sapiens GN=TMEM2...	[more]

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TCONS_00050753-protein (polypeptide) - C. hemisphaerica