TCONS_00050865-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00050865-protein
Unique NameTCONS_00050865-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length178

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00050865-protein ID=TCONS_00050865-protein|Name=TCONS_00050865-protein|organism=Clytia hemisphaerica|type=polypeptide|length=178bp
RSRNCTNPRPSGFGKPCVLIGPHVETSQCSEKPCPIDAQWGSWAQWTVCE
PNCNKGYHTRTRTCNNPVAANGGKDCPDKAKNGIEKQQCVENILPCPVDG
GFGQWNSWSKCSATCGRGLTERNRDCNKPEPRNGGKSCVGAQHEVKECLD
KPCVQIMNSTLSGNNTAVSNSTIAIVIS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032235XLOC_032235Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00050865TCONS_00050865Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 175..178
NoneNo IPR availablePRINTSPR01705TSP1REPEATcoord: 38..51
score: 31.44
coord: 137..148
score: 34.0
coord: 56..67
score: 47.32
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 102..154
e-value: 3.1E-12
score: 56.7
coord: 40..97
e-value: 3.5E-9
score: 46.5
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 36..96
e-value: 1.8E-12
score: 46.8
coord: 98..153
e-value: 2.4E-16
score: 59.3
coord: 1..34
e-value: 0.0053
score: 16.5
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 104..153
e-value: 7.3E-11
score: 42.0
coord: 42..89
e-value: 5.7E-7
score: 29.6
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 37..97
score: 10.959
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 99..154
score: 12.564
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 33..90
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 95..153

Blast
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BLAST of TCONS_00050865-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 1.843e-34
Identity = 66/153 (43.14%), Postives = 84/153 (54.90%), Query Frame = 0 
Query:    1 RSRNCTNPRPSGFGKPCVLIGPHVETSQCSEKPCPIDAQWGSWAQWTVCEPNCNKGYHTRTRTCNNPVAANGGKDCPDKAKNGIEKQQCVENILPCPVDGGFGQWNSWSKCSATCGRGLTERNRDCNKPEPRNGGKSCVGAQHEVKECLDKPC 153
            RSR C  P P+  GKPC   G  +E   C  KPCP+D  W  W+ W  C  +C +G  TRTRTCNNP   +GG+ C     N +E   C  NI PCPV G +  W  W  CS +CG+G   R R CN P P  GG  C GA+ +++ C ++ C
Sbjct: 4552 RSRLCNQPLPANGGKPCQ--GSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPC---EGNAVEIIMC--NIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNC 4697

HSP 2 Score: 114.775 bits (286), Expect = 7.237e-30
Identity = 62/153 (40.52%), Postives = 79/153 (51.63%), Query Frame = 0 
Query:    1 RSRNCTNPRPSGFGKPCVLIGPHVETSQCSEKPCPIDAQWGSWAQWTVCEPNCNKGYHTRTRTCNNPVAANGGKDCPDKAKNGIEKQQCVENILPCPVDGGFGQWNSWSKCSATCGRGLTERNRDCNKPEPRNGGKSCVGAQHEVKECLDKPC 153
            R+R C NP     G+PC   G  VE   C+ +PCP+   W +W  W  C  +C KG  TR R CNNP  A GG  C     +G E Q  V N   CP+ G +  W SWS CS +CG G  +R R C+ P P+ GG+ C G+  +   C   PC
Sbjct: 4609 RTRTCNNPSVQHGGRPCE--GNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYC-----DGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPC 4754

HSP 3 Score: 111.694 bits (278), Expect = 7.934e-29
Identity = 62/155 (40.00%), Postives = 85/155 (54.84%), Query Frame = 0 
Query:    1 RSRNCTNPRPSGFGKPCVLIGPHVETSQCSEKPCPIDAQWGSWAQWTVCEPNCNKGYHTRTRTCNNPVAANGGKDC--PDKAKNGIEKQQCVENILPCPVDGGFGQWNSWSKCSATCGRGLTERNRDCNKPEPRNGGKSCVGAQHEVKECLDKPC 153
            R+R C++P P   G+ C   G  V++  C+  PCP    W  W+ W  C   CN G   R RTC+NP  +NGG+ C  PD      + Q+C  ++  CPVDG +G W+SWS+CSA+CG G   R R C+ P P  GG+ C G   +V  C  + C
Sbjct: 4723 RTRGCSDPVPQYGGRKCE--GSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDS-----QIQRCNTDM--CPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQAC 4868

HSP 4 Score: 92.4337 bits (228), Expect = 3.772e-22
Identity = 45/114 (39.47%), Postives = 63/114 (55.26%), Query Frame = 0 
Query:   40 WGSWAQWTVCEPNCNKGYHTRTRTCNNPVAANGGKDCPDKAKNGIEKQQCVENILPCPVDGGFGQWNSWSKCSATCGRGLTERNRDCNKPEPRNGGKSCVGAQHEVKECLDKPC 153
            +  W+ W  C   C KG   R+R CN P+ ANGGK C     + +E + C     PCPVDG + +W+ W +C+ +CGRG   R R CN P  ++GG+ C G   E+  C  +PC
Sbjct: 4532 FSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPC---QGSDLEMRNCQNK--PCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPC 4640
The following BLAST results are available for this feature:
BLAST of TCONS_00050865-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN11.843e-3443.14Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
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