TCONS_00050868-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00050868-protein
Unique NameTCONS_00050868-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length296

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00050868-protein ID=TCONS_00050868-protein|Name=TCONS_00050868-protein|organism=Clytia hemisphaerica|type=polypeptide|length=296bp
NFELPAAGRGSQIKITGSWLSGAGLFCSAKYNDFVFCFHECNLLCRPFPV
GLSVKKMAKPHASRNSTLPGGVSRLGRATVYKKKALYKRKKVATKPAAKD
AATTKVKQVGGDKNGKTRTVPLQKESRFYPTEDIKRPLRNRKTQRPSKLR
QSLTPGTVCILLAGRHRGKRVVLLKQLDNSGLLLVTGPYKVNGVPLRRVP
ASYVIATRTKVDVSGVKLSDKINDTLFKRSKKAKRSSDAMFEESAAGYKV
SDERKSEQESVDTAVLAAIGKEPQLKRYMSQLFTLRKGQFPHEMIF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032238XLOC_032238Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00050868TCONS_00050868Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR00091560S_ribosomal_L6E
IPR014722Rib_L2_dom2
IPR005568Ribosomal_L6_N
IPR008991Translation_prot_SH3-like
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR00091560S ribosomal protein L6EPFAMPF01159Ribosomal_L6ecoord: 191..296
e-value: 1.2E-36
score: 125.4
IPR014722Ribosomal protein L2 domain 2GENE3D2.30.30.30coord: 150..265
e-value: 5.7E-25
score: 87.2
IPR005568Ribosomal protein L6, N-terminalPFAMPF03868Ribosomal_L6e_Ncoord: 55..104
e-value: 4.8E-9
score: 36.1
NoneNo IPR availableCDDcd13156KOW_RPL6coord: 145..296
e-value: 2.81628E-79
score: 238.987
IPR008991Translation protein SH3-like domainSUPERFAMILY50104Translation proteins SH3-like domaincoord: 151..243

Blast
[Close]
BLAST of TCONS_00050868-protein vs. Swiss-Prot (Human)
Match: RL6 (60S ribosomal protein L6 OS=Homo sapiens GN=RPL6 PE=1 SV=3)

HSP 1 Score: 202.216 bits (513), Expect = 1.173e-63
Identity = 112/247 (45.34%), Postives = 153/247 (61.94%), Query Frame = 0 
Query:   61 HASRNSTLPGGVSRLGRATVYKKKALYKRKKVATKPAAKDAA-----TTKVKQVGGDKNGKTRTVPLQKESRFYPTEDIKRPLRNRK----TQRPSKLRQSLTPGTVCILLAGRHRGKRVVLLKQLDNSGLLLVTGPYKVNGVPLRRVPASYVIATRTKVDVSGVKLSDKINDTLFKRSK--KAKRSSDAMFEESAAGYKVSDERKSEQESVDTAVLAAIGKEPQLKRYMSQLFTLRKGQFPHEMIF 296
            H SRN  L  G+ R  R+ +Y +KA+YKRK  A K   +         T  K VGGDKNG TR V L+K  R+YPTED+ R L +      +Q   KLR S+TPGT+ I+L GRHRGKRVV LKQL  SGLLLVTGP  +N VPLRR    +VIAT TK+D+S VK+   + D  FK+ K  K +     +F+     Y+++++RK +Q++VD+ +L  I   PQL+ Y+  +F L  G +PH+++F
Sbjct:   43 HCSRNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQL-ASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEITEQRKIDQKAVDSQILPKIKAIPQLQGYLRSVFALTNGIYPHKLVF 288
The following BLAST results are available for this feature:
BLAST of TCONS_00050868-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL61.173e-6345.3460S ribosomal protein L6 OS=Homo sapiens GN=RPL6 P... [more]
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