TCONS_00050870-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00050870-protein
Unique NameTCONS_00050870-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length558

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00050870-protein ID=TCONS_00050870-protein|Name=TCONS_00050870-protein|organism=Clytia hemisphaerica|type=polypeptide|length=558bp
MSEEEQVPSQAPTPQEPKDEGEEPHTSPKVEEEQPKEEQQEEAQEEQKPE
TPKSPKAQDEEEQPPSEEPSGEEQQEQPAEAVEQPEGGEEVGQPEAEGDE
GTEEQAGSRPASSASIMSNSSSMRGMSPIAPQERFKVTFLLPLEKQYTCP
QCKDVLRYPVQFEECGHRVCSSCYHEYLRVEPRCPVDQVSINRDKCSLDK
ELNMEIMSLEAKCNNNEWGCRWEGYHNGVQEHMEECEYADILCVNDCGAK
FQRRFQQKHLDKDCRKKIISCAFCDSRFLREEKKLHLEDCLKVPLPCPNK
CDKKLTIARDELDKHIEEDCPRTKIVCQFEEIGCPHRCAREKLARHYKTG
IIEHVRLLYDIIMKQGQRLDQHHELLQDHGALLETHQTRLADMERVNRTQ
LIWRIDEFGRKMKEAKNGNTPTLFSPPFYTSRHGYRLAASLCLNGDGKGK
GTHISAFISILKGAYDNLLKWPFSYRVSFYLLDQNNDPSLRKHIRFSIKP
NPCPDNEPFLGQPKKIEKNASFGGAKFANQEEVESRTYVKDDVIYLKIAV
DCDGTAEP
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032239XLOC_032239Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00050870TCONS_00050870Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR002083MATH/TRAF_dom
IPR001293Znf_TRAF
IPR008974TRAF-like
IPR013083Znf_RING/FYVE/PHD
IPR012227TNF_rcpt--assoc_TRAF
IPR017907Znf_RING_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0042981regulation of apoptotic process
GO:0007165signal transduction
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042981 regulation of apoptotic process
biological_process GO:0007165 signal transduction
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 149..187
e-value: 0.0032
score: 26.7
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 149..188
score: 10.335
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 148..186
e-value: 1.17957E-4
score: 38.966
IPR002083MATH/TRAF domainSMARTSM00061math_3coord: 403..533
e-value: 3.0E-7
score: 40.1
IPR002083MATH/TRAF domainPROSITEPS50144MATHcoord: 398..550
score: 15.456
IPR001293Zinc finger, TRAF-typePFAMPF02176zf-TRAFcoord: 232..282
e-value: 1.1E-6
score: 29.2
coord: 286..346
e-value: 1.6E-14
score: 54.2
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 286..343
score: 14.963
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 232..282
score: 11.655
IPR008974TRAF-likeGENE3D2.60.210.10coord: 374..552
e-value: 5.4E-28
score: 97.5
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 208..274
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 269..346
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 399..551
NoneNo IPR availablePFAMPF13923zf-C3HC4_2coord: 149..186
e-value: 1.4E-7
score: 31.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..127
NoneNo IPR availableCDDcd00270MATH_TRAF_Ccoord: 400..551
e-value: 2.45221E-64
score: 207.845
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 142..214
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 137..211
e-value: 1.0E-10
score: 40.7
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 276..303
e-value: 7.4E-6
score: 25.6
coord: 304..347
e-value: 6.0E-9
score: 35.5
coord: 253..275
e-value: 8.7E-4
score: 18.9
coord: 212..252
e-value: 1.4E-11
score: 43.9
IPR012227TNF receptor-associated factor TRAFPIRSFPIRSF015614TRAFcoord: 360..558
e-value: 2.2E-60
score: 202.7
coord: 111..369
e-value: 2.9E-52
score: 175.9
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 165..174

Blast
[Close]
BLAST of TCONS_00050870-protein vs. Swiss-Prot (Human)
Match: TRAF4 (TNF receptor-associated factor 4 OS=Homo sapiens GN=TRAF4 PE=1 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 1.978e-80
Identity = 148/476 (31.09%), Postives = 241/476 (50.63%), Query Frame = 0 
Query:  135 FKVTFLLPLEKQYTCPQCKDVLRYPVQFEECGHRVCSSCYHEYLRVEP-RCPVDQVSINRDKCSLDKELNMEIMSLEAKCNNNEWGCRWEGYHNGVQEHME-----------------------------------ECEYA-------------------DILCVNDCGAKFQRRFQQKHLDKDCRKKIISCAFCDSRFLREEKKLHLEDCLKVPLPCPNKCDKKLTIARDELDKHIEEDCPRTKIVCQFEEIGCPHRCAREKLARHYKTGIIEHVRLLYDIIMKQGQRLDQHHELLQDHGALLETHQTRLADMERVNRTQLIWRIDEFGRKMKEAKNGNTPTLFSPPFYTSRHGYRLAASLCLNGDGKGKGTHISAFISILKGAYDNLLKWPFSYRVSFYLLDQNNDPSLRK--HIRFSIKPNPCPDN--EPFLGQPKKIEKNASFGGAKFANQEEVESRTYVKDDVIYLKIAVD 551
            F   FL   +++  CP C   +R PVQ   CGHR C +C  E+L     +CP DQ+ ++  K   D EL ++++ L  +C ++E GCRW G    +Q H+                                    +CE+                     + C N CGA+  RR   +H   +C K+   C +C   F+ +  + H   C ++P+ CPN+C    T+AR++L  H+++ C    ++C F++ GC HRC +  +ARH +  +  H+ ++  ++ +Q Q L    EL ++           L ++   +   LIW+I  +GR+++EAK       FSP FYT ++GY+L  S  LNG+G G+GTH+S +I +L GA+DNLL+WPF+ RV+F LLDQ +DP L K  H+  +  P+P   N  +P   +    E +  FG  KF + +++  R YV+DD ++++ AV+
Sbjct:    4 FDYKFLEKPKRRLLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLPLDYAKIYPDPELEVQVLGLPIRCIHSEEGCRWSGPLRHLQGHLNTCSFNVIPCPNRCPMKLSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYESHEGMCPQESVYCENKCGARMMRRLLAQHATSECPKRTQPCTYCTKEFVFDTIQSHQYQCPRLPVACPNQCGVG-TVAREDLPGHLKDSCNTALVLCPFKDSGCKHRCPKLAMARHVEESVKPHLAMMCALVSRQRQEL---QELRRE-----------LEELSVGSDGVLIWKIGSYGRRLQEAKAKPNLECFSPAFYTHKYGYKLQVSAFLNGNGSGEGTHLSLYIRVLPGAFDNLLEWPFARRVTFSLLDQ-SDPGLAKPQHVTETFHPDPNWKNFQKPGTWRGSLDESSLGFGYPKFISHQDIRKRNYVRDDAVFIRAAVE 463
The following BLAST results are available for this feature:
BLAST of TCONS_00050870-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF41.978e-8031.09TNF receptor-associated factor 4 OS=Homo sapiens G... [more]
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