TCONS_00050872-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00050872-protein
Unique NameTCONS_00050872-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length506

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00050872-protein ID=TCONS_00050872-protein|Name=TCONS_00050872-protein|organism=Clytia hemisphaerica|type=polypeptide|length=506bp
MDKAEAAAKRVVIDCTGKIPEVDLPEGWIALAHQSGGIVYIHTETRVVTW
SRPYLIHRTASVRKHDPPLISIPCLHERRSKEGTTSNKTEGKEDEIIVED
EKMSSITNGGQQKRKQCPMRQEEGTGDEESSKKQKLENSFPSPCQKPADG
DLQKNHDISVTDSIGSQDESLMETEDASTSLPSSQESNATSLGGGESQES
SSSTRNNKMKNVLSEFETVHIDSVHDYLGQLFKFRDLEGDEWKLPLFTDK
AFNASQTFLVPKKKERFETKGKTNLQVLYEYTQKESKTDSKVVFSKIEAK
GLTEFYTETVIGNLKYGIGKGDTFKIAKHDASKVTIDILNPKLVPKEDDE
PEIAEVYQFYDDILIDDEKVVENMSKYDTDEEEPLMMPYDIMLQLLERNH
EDYKSDDLTECYVTMPDEYEYSIKYKEIEATAGSGHMEGSGNLLHYAKQL
AAQIFIKEMFPLLKYWGSIIRLSRQRKPVAKSNETPSNKYLSAMKDAMRK
MTNESS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032240XLOC_032240Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00050872TCONS_00050872Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001202WW_dom
IPR014720dsRBD_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001202WW domainSMARTSM00456ww_5coord: 23..55
e-value: 3.1E-5
score: 33.4
IPR001202WW domainPROSITEPS50020WW_DOMAIN_2coord: 22..55
score: 11.211
IPR001202WW domainSUPERFAMILY51045WW domaincoord: 18..55
NoneNo IPR availableGENE3D2.20.70.10coord: 21..134
e-value: 1.7E-6
score: 27.1
NoneNo IPR availableGENE3D3.30.160.20coord: 260..344
e-value: 6.1E-8
score: 32.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..207
NoneNo IPR availableCDDcd00201WWcoord: 25..53
e-value: 0.00482432
score: 34.0406
NoneNo IPR availableSUPERFAMILY54768dsRNA-binding domain-likecoord: 262..341
IPR014720Double-stranded RNA-binding domainPROSITEPS50137DS_RBDcoord: 273..341
score: 9.586

Blast
[Close]
BLAST of TCONS_00050872-protein vs. Swiss-Prot (Human)
Match: DGCR8 (Microprocessor complex subunit DGCR8 OS=Homo sapiens GN=DGCR8 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.042e-19
Identity = 40/73 (54.79%), Postives = 51/73 (69.86%), Query Frame = 0 
Query:   10 RVVIDCTGKIPEVDLPEGWIALAHQSGGIVYIHTETRVVTWSRPYLIHRTASVRKHDPPLISIPCLHERRSKE 82
            + V+   G+ P   LP+GWI   H SG  VY+H E+RVVTWSRPY +  T S+RKHDPPL SIPCLH ++ K+
Sbjct:  289 KTVLKSRGRPPTEPLPDGWIMTFHNSGVPVYLHRESRVVTWSRPYFLG-TGSIRKHDPPLSSIPCLHYKKMKD 360

HSP 2 Score: 82.8037 bits (203), Expect = 1.243e-16
Identity = 63/216 (29.17%), Postives = 109/216 (50.46%), Query Frame = 0 
Query:  260 VPKKKE-RFETKGKTNLQVLYEYTQKESKTDSKVVFSKIEAKGLTE-FYTETVIGNLKYGIGKGDTFKIAKHDASKVTIDILNPKLVPKEDDE-PEIAEVYQFYDDILIDDEKVVENMSKYDTDEEEPLMMPYDIMLQLLERNHEDYKSDDLTECYVTMPDEYEYSIKYKEIEATAGSGHMEGSGNLLHYAKQLAAQIFIKEMFPLLKYWGSIIRL 472
             P KKE      GK+ + +L+EY Q+  K   + V++  E +  +E F     I  + YG G   + K+AK+ A++ T++IL P  V +  +E P+ +E  ++++ I I+D +V E  SK        L+ PY I+ + L+RNH      D +  +  +P + + S    E     G   + G        KQLA+Q  ++ + P +K WGS++R+
Sbjct:  497 APTKKEFVINPNGKSEVCILHEYMQRVLKV--RPVYNFFECENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPDFVKQTSEEKPKDSEELEYFNHISIEDSRVYELTSKAG------LLSPYQILHECLKRNH---GMGDTSIKFEVVPGKNQKS----EYVMACGKHTVRGWCKNKRVGKQLASQKILQLLHPHVKNWGSLLRM 697
The following BLAST results are available for this feature:
BLAST of TCONS_00050872-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DGCR81.042e-1954.79Microprocessor complex subunit DGCR8 OS=Homo sapie... [more]
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