TCONS_00050913-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00050913-protein
Unique NameTCONS_00050913-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length567

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00050913-protein ID=TCONS_00050913-protein|Name=TCONS_00050913-protein|organism=Clytia hemisphaerica|type=polypeptide|length=567bp
MATEEDLFTLDLQNLNLKVIPEDVFKNANLKHIKLTPGNNIEVSEKYKLM
DILKNLETVDDRDITVQRNAIKNLNAIFQRRLQEMFLTKQASEIYCEPAE
EKVRIQKMITLAQSTILAGPSALSNYRNYKLERLIEENYELFVSDALELK
ELKESEKELTPLKRIGRQQQTLQSLKRKRFSSPLVNKKPRRSATTHSVHH
LLQTHSKNNDPEDFQTKVWMCAFQPDINDPTKTTNLVATCGGDSICFIDC
DSGIVLKKYKQTNEEFYCLCWTILKYKDELKGEESTLAALAVAGISGDIK
LIDPDNLICFERVSYHRKPVDALMFHPIIQHWLFSGSEDRTVVLWDLGYP
FSSDVRKAEKKLVLKGSLQSTLRNLTFAPHGKVILGATDDGLHVWNVDFV
GVSNKDHVRSAMYTYRLPSKISQAIDSLNILNNNLFAMKRLGEGVIQIIY
SKSEFLQNDLQLVTSLSWRKTSTAFLKFNFTKGCSTLLAGDDEGTIWMYN
LKELMLKSHDDMDNDAKALVENLQPIKAEKLRCENKYGRLFNHVCSSSNL
DHVVGVTDANVVAIWNR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032265XLOC_032265Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00050913TCONS_00050913Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR032675L_dom-like
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 453..500
e-value: 220.0
score: 2.2
coord: 252..303
e-value: 430.0
score: 0.4
coord: 195..249
e-value: 4.2
score: 13.0
coord: 306..346
e-value: 0.0055
score: 25.9
coord: 357..396
e-value: 5.6
score: 12.3
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 313..347
score: 11.21
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 200..567
e-value: 2.4E-33
score: 115.0
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 5..110
e-value: 0.0013
score: 17.0
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 383..397
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 333..347
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 313..405
score: 10.153
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 217..566

Blast
[Close]
BLAST of TCONS_00050913-protein vs. Swiss-Prot (Human)
Match: LRWD1 (Leucine-rich repeat and WD repeat-containing protein 1 OS=Homo sapiens GN=LRWD1 PE=1 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 1.362e-56
Identity = 162/613 (26.43%), Postives = 276/613 (45.02%), Query Frame = 0 
Query:   10 LDLQNLNLKVIPED-------VFKNAN--------------LKHIKLTPGNNIEVSEKYKLMDILKNLETVDDRDITVQRNAIKNLNAIFQRRLQ---EMFLTKQASEIYCEPAEEKVRIQK-MITLAQSTILAGPSALSNYRNYKLERLIEENYELFVSDALELKELKESEK------------ELTPLKRIGRQQQTLQSLKRKRFS-------SPLVNKKPRRSATTHSVHHLLQTHSKNNDPEDFQTKVWMCAFQPDINDPTKTTNLVATCGGDSICFIDCDSGIVLKKYKQTNEEFYCLCWTILKYKDELKGEESTLAALAVAGISGDIKLIDPDNLICFERVSYHRKPVDALMFHPIIQHWLFSGSEDRTVVLWDLGYPFSSDVRKAEKKLVL-KGSLQSTLRNLTFAPHGKVILGATDDGLHVWNVDFVGVSNKDHVRSAMYTYRLPSKIS-QAIDSLNILNNNLFAMKRLGEGVIQIIYSKSEFLQNDLQ------LVTSLSWRKTSTAFLKFNFTKGCSTLLAGDDEGTIWMYNLKELMLKSHDDMDNDAKALVENL---QPIKAEKLRCENKYGRLFNHVCSSSNLDHVVGVTDANVVAIWNR 567
            LDL N +L+ +P++       V + AN              L+ + L     + V++  K+  +L  L  V+ +D +   + ++NLN     R+    E F+          P EE  + Q   +  A   +  GP +LS +  +++ R+I E  EL  +   ++++    EK             L  LKR      +L   KR   S       SP+      + A      H LQ HSKNN P+D +T++W CAF+P   +   T+  VATCGG+++C IDC +GIVL KYK   EEF+ + WT L    +  G +   + LA AG+ G ++L+      C   +  H+K +  L F P  +  LF+ S D+ ++LWD+G P      +A + L L   S+   L  +   P  +++ G  + G   W+V       K  V    + +   S+ S + +D L  +N ++ A K  G G I +   +  +     Q      ++  L W  T  A+   +       +L GD+EG +W+Y++  + LK    +    +A  + L   QP    ++  +     + N V ++++  ++  +TD+N+VAIW R
Sbjct:   52 LDLSNNHLETLPDNLGLSHLRVLRCANNQLGDVTALCQFPKLEELSLEGNPFLTVNDNLKVSFLLPTLRKVNGKDASSTYSQVENLNRELTSRVTAHWEKFMATLG------PEEEAEKAQADFVKSAVRDVRYGPESLSEFTQWRV-RMISE--ELVAASRTQVQKANSPEKPPEAGAAHKPRARLAALKRPDDVPLSLSPSKRACASPSAQVEGSPVAGSDGSQPAVKLEPLHFLQCHSKNNSPQDLETQLWACAFEPAWEE-GATSQTVATCGGEAVCVIDCQTGIVLHKYKAPGEEFFSVAWTALMVVTQ-AGHKKRWSVLAAAGLRGLVRLLHVRAGFCCGVIRAHKKAIATLCFSPAHETHLFTASYDKRIILWDIGVPNQDYEFQASQLLTLDTTSIPLRLCPVASCPDARLLAGC-EGGCCCWDVRL-DQPQKRRVCEVEFVFSEGSEASGRRVDGLAFVNEDIVASKGSGLGTICLWSWRQTWGGRGSQSTVAVVVLARLQWSSTELAYFSLSACPDKGIVLCGDEEGNVWLYDVSNI-LKQPPLLPAALQAPTQILKWPQPWALGQVVTKT----MVNTVVANASFTYLTALTDSNIVAIWGR 646
The following BLAST results are available for this feature:
BLAST of TCONS_00050913-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRWD11.362e-5626.43Leucine-rich repeat and WD repeat-containing prote... [more]
back to top