TCONS_00050992-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00050992-protein
Unique NameTCONS_00050992-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length317

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00050992-protein ID=TCONS_00050992-protein|Name=TCONS_00050992-protein|organism=Clytia hemisphaerica|type=polypeptide|length=317bp
MKIMADVEELKNQKRKAEEAYRNAVPATQNQQQKLRVCEICAAFLSLYDN
DRRLADHFGGRLHMGFIAVRDRLEELKAIVEKKRESRRGKRDKDRTDKGN
DRGDKDRGDKDRGDRDRGDRDRGDRDRDRKDRRRSRSKSRERRRDRDRDR
DRDRDRDRDRRRSERSDRDKERDRDRKRRSRSRSRDRDRRRSRRSRSRER
RRDRDRSRDRSRDRRRDRSRDRRDRSKERKGSDTVATEERQTENDIENRS
TGNPDSEKNGDTNDRVPQPQVESMDQGEGENSTDNQTSYENESKLNDLND
EKPTNEEEEETIRAEDY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032326XLOC_032326Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00050992TCONS_00050992Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004882Luc7-rel
Vocabulary: Cellular Component
TermDefinition
GO:0005685U1 snRNP
Vocabulary: Biological Process
TermDefinition
GO:0006376mRNA splice site selection
Vocabulary: Molecular Function
TermDefinition
GO:0003729mRNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006376 mRNA splice site selection
cellular_component GO:0005685 U1 snRNP
molecular_function GO:0003729 mRNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004882Luc7-relatedPFAMPF03194LUC7coord: 1..93
e-value: 3.4E-25
score: 89.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..317
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31

Blast
[Close]
BLAST of TCONS_00050992-protein vs. Swiss-Prot (Human)
Match: LC7L2 (Putative RNA-binding protein Luc7-like 2 OS=Homo sapiens GN=LUC7L2 PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 9.819e-34
Identity = 54/86 (62.79%), Postives = 75/86 (87.21%), Query Frame = 0 
Query:    2 KIMADVEELKNQKRKAEEAYRNAVPATQNQQQKLRVCEICAAFLSLYDNDRRLADHFGGRLHMGFIAVRDRLEELKAIVEKKRESR 87
            K+M +VE+ + +KR+AEE YRN++PA+  QQQKLRVCE+C+A+L L+DNDRRLADHFGG+LH+GFI +R++LEELK +V +K+E R
Sbjct:  154 KVMDEVEKARAKKREAEEVYRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEELKRVVAEKQEKR 239
The following BLAST results are available for this feature:
BLAST of TCONS_00050992-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LC7L29.819e-3462.79Putative RNA-binding protein Luc7-like 2 OS=Homo s... [more]
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