TCONS_00051050-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00051050-protein
Unique NameTCONS_00051050-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length301

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00051050-protein ID=TCONS_00051050-protein|Name=TCONS_00051050-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp
MRDLMHKLEKKRGNVEITFDDIINDEALNEIESEDADLKDFFQKIEIIKE
DIGIIKINITNVDKQQNVILTSTTITTEQETRELLDQTMADISKRSQRTK
RLLKEIKEGVEEDQENGDNSSHCRMKRCQFNALSLEFMDNMTRYNAIQEL
FRAKSKSRIKRQLNITKKTEVSDEELEEMLENKEPINIFTQGIVTDTDDA
KRRLKEVEDRHNDIIKLEKSVQELHSLFKDISILIDKQGDLIDHIETNVE
NATEYIASAIPKIHAAVRYKNKANRKKIMLFGVVGSIILIIILVVVMKYA
R
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032359XLOC_032359Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00051050TCONS_00051050Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000727T_SNARE_dom
IPR006011Syntaxin_N
IPR006012Syntaxin/epimorphin_CS
IPR010989SNARE
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
GO:0016192vesicle-mediated transport
Vocabulary: Molecular Function
TermDefinition
GO:0005484SNAP receptor activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0016020 membrane
molecular_function GO:0005484 SNAP receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000727Target SNARE coiled-coil homology domainSMARTSM00397tSNARE_6coord: 199..266
e-value: 1.1E-11
score: 54.9
IPR000727Target SNARE coiled-coil homology domainPFAMPF05739SNAREcoord: 241..292
e-value: 9.8E-10
score: 38.2
IPR000727Target SNARE coiled-coil homology domainPROSITEPS50192T_SNAREcoord: 204..266
score: 17.31
IPR006011Syntaxin, N-terminal domainSMARTSM00503SynN_4coord: 33..156
e-value: 2.7E-18
score: 76.8
IPR006011Syntaxin, N-terminal domainPFAMPF00804Syntaxincoord: 38..239
e-value: 1.9E-43
score: 148.4
NoneNo IPR availableGENE3D1.20.5.110coord: 226..270
e-value: 3.6E-12
score: 45.7
NoneNo IPR availableGENE3D1.20.58.70coord: 35..225
e-value: 1.1E-36
score: 126.1
NoneNo IPR availableCDDcd00179SynNcoord: 38..193
e-value: 6.75952E-24
score: 93.8881
NoneNo IPR availableCDDcd15848SNARE_syntaxin1-likecoord: 204..259
e-value: 2.59958E-19
score: 78.7317
IPR006012Syntaxin/epimorphin, conserved sitePROSITEPS00914SYNTAXINcoord: 210..249
IPR010989SNARESUPERFAMILY47661t-snare proteinscoord: 36..259

Blast
[Close]
BLAST of TCONS_00051050-protein vs. Swiss-Prot (Human)
Match: STX2 (Syntaxin-2 OS=Homo sapiens GN=STX2 PE=1 SV=3)

HSP 1 Score: 177.563 bits (449), Expect = 4.640e-54
Identity = 98/267 (36.70%), Postives = 167/267 (62.55%), Query Frame = 0 
Query:   35 DADLKDFFQKIEIIKEDIGIIKINITNVDKQQNVILTSTTITTEQETRELLDQTMADISKRSQRTKRLLKEIKEGVEEDQENGDNSSHCRMKRCQFNALSLEFMDNMTRYNAIQELFRAKSKSRIKRQLNITKKTEVSDEELEEMLENKEPINIFTQGIVTDTDDAKRRLKEVEDRHNDIIKLEKSVQELHSLFKDISILIDKQGDLIDHIETNVENATEYIASAIPKIHAAVRYKNKANRKKIMLFGVVGSIILIIILVVVMKYAR 301
            D  + DFF ++E I+  I  I   +  V K  ++IL++     E + +E L+    +I K + + +  LK I++  ++D+     S   R++R Q + LS +F++ M  YN  Q LFR +SK RI+RQL IT +T  +D+ELEEMLE+ +P +IFT  I++D+   ++ L E+E RH DI+KLE S++ELH +F D+++ ++ QG++I++IE NV NAT+Y+  A  +   A++Y++KA RKK ++  V   ++ II L++ +   +
Sbjct:   26 DHFMDDFFHQVEEIRNSIDKITQYVEEVKKNHSIILSAPN--PEGKIKEELEDLNKEIKKTANKIRAKLKAIEQSFDQDESGNRTSVDLRIRRTQHSVLSRKFVEAMAEYNEAQTLFRERSKGRIQRQLEITGRT-TTDDELEEMLESGKP-SIFTSDIISDSQITRQALNEIESRHKDIMKLETSIRELHEMFMDMAMFVETQGEMINNIERNVMNATDYVEHAKEETKKAIKYQSKARRKKWIIIAVSVVLVAIIALIIGLSVGK 288
The following BLAST results are available for this feature:
BLAST of TCONS_00051050-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STX24.640e-5436.70Syntaxin-2 OS=Homo sapiens GN=STX2 PE=1 SV=3[more]
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