TCONS_00051168-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00051168-protein
Unique Name	TCONS_00051168-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	809

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00051168-protein ID=TCONS_00051168-protein|Name=TCONS_00051168-protein|organism=Clytia hemisphaerica|type=polypeptide|length=809bp
MVASNEIKRCHVYTLDEQKLNIPLQSRLLTTELLDIVASHFNLKEKEYFG
LFYYDNRECRCWLKSDKKVVDHDFPKTSSPVTLHFGVKKYIDTITILRDN
QTIELFYFQCRINIFKGALECESRIVFQLAAHVLQATHGDYVSDAIALAD
LKNLQVVPVRTLQEHPTLSFCEEEIIREYKNLDGLTKGDAVIGYLRIIES
LPMYGVHYYDVKDKEQIPWKLGLSHKGAAQYDFHDKNMPRKRFSWSQMEN
LFYRDKKFTLEYRDSGPRSAQKASNKTSSNHSLNRLNTIRKSISHRIKSC
VWYASSSTQCRDIWLMAVEQHQFYLDKKQSSRSINGQRCLKEMARNLCRS
STSLVSMKSTGSGIQDNTSETASYYFSLDGDSQNSQVIAAEMDMVSALQA
RKSFLEKQLIEKRELLNILCLREAELTGIVPSELPESPTHPGRPMRRKVG
TSFEFDESLLENPDFERPGTELENMERDFEIQKQIVNAAHRLASDPSAKK
KVKKARQLSYQKSLVKLKTMEQQLEYMRRDEEEQGHDFQDHNWHNNKKDE
GGSGSLGDSLGPIDGESSSSKDSSNYTPSPLDSTNNMFKKRARDSMYLAT
PVINTSNMSSTNSPFSQRRHYEPSPRQNGGWSASVTASPVNGHNSTNEHD
SFNEFSEDYDTSFSRERLRTQSVGNRLHKKPPLPTVVKVRAKEFHSSADM
LSQDTNDSPHQYVCGDFESTGMYSASAGQKKYGDYGSNPSIPHSYSSPGI
AGRVHRHSPATAKRLEQLSLSPSSGAPRPPPSYAQHSMESGSEQSEDMWH
EDAGEETLV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_032434	XLOC_032434	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00051168	TCONS_00051168	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019749	Band_41_domain
IPR018980	FERM_PH-like_C
IPR021774	DUF3338
IPR019748	FERM_central
IPR014352	FERM/acyl-CoA-bd_prot_3-hlx
IPR011993	PH_dom-like
IPR018979	FERM_N
IPR000299	FERM_domain
IPR029071	Ubiquitin-rel_dom

Vocabulary: **Cellular Component**
Term	Definition
GO:0005856	cytoskeleton

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005856	cytoskeleton

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 395..415
None	No IPR available	GENE3D	3.10.20.90		coord: 9..87 e-value: 2.8E-18 score: 65.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 603..658
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 530..586
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 734..809
IPR019749	Band 4.1 domain	PRINTS	PR00935	BAND41	coord: 189..205 score: 40.07 coord: 121..141 score: 35.71 coord: 41..53 score: 46.96 coord: 108..121 score: 28.57
IPR019749	Band 4.1 domain	SMART	SM00295	B41_5	coord: 4..209 e-value: 5.8E-38 score: 142.1
IPR018980	FERM, C-terminal PH-like domain	SMART	SM01196	FERM_C_3	coord: 213..332 e-value: 1.3E-15 score: 67.9
IPR018980	FERM, C-terminal PH-like domain	PFAM	PF09380	FERM_C	coord: 213..330 e-value: 4.5E-19 score: 68.5
IPR021774	Protein of unknown function DUF3338	PFAM	PF11819	DUF3338	coord: 366..500 e-value: 3.6E-26 score: 91.7
IPR019748	FERM central domain	PFAM	PF00373	FERM_M	coord: 97..209 e-value: 4.3E-20 score: 72.2
IPR019748	FERM central domain	CDD	cd14473	FERM_B-lobe	coord: 102..201 e-value: 4.7004E-17 score: 76.9014
IPR019748	FERM central domain	SUPERFAMILY	47031	Second domain of FERM	coord: 94..204
IPR014352	FERM/acyl-CoA-binding protein, 3-helical bundle	GENE3D	1.20.80.10		coord: 91..203 e-value: 2.6E-20 score: 72.3
IPR011993	PH domain-like	GENE3D	2.30.29.30		coord: 204..329 e-value: 1.4E-21 score: 76.2
IPR011993	PH domain-like	SUPERFAMILY	50729	PH domain-like	coord: 202..265 coord: 296..345
IPR018979	FERM, N-terminal	PFAM	PF09379	FERM_N	coord: 13..71 e-value: 6.5E-10 score: 38.7
IPR000299	FERM domain	PROSITE	PS50057	FERM_3	coord: 8..328 score: 56.767
IPR029071	Ubiquitin-related domain	SUPERFAMILY	54236	Ubiquitin-like	coord: 5..91

Blast

[Close]

BLAST of TCONS_00051168-protein vs. Swiss-Prot (Human)
Match: FRM4A (FERM domain-containing protein 4A OS=Homo sapiens GN=FRMD4A PE=1 SV=3)

HSP 1 Score: 436.032 bits (1120), Expect = 1.653e-138
Identity = 233/529 (44.05%), Postives = 336/529 (63.52%), Query Frame = 0

Query:    1 MVASNEIKRCHVYTLDEQKLNIPLQSRLLTTELLDIVASHFNLKEKEYFGLFYYDNRECRCWLKSDKKVVDHDFPKTSSPVTLHFGVKKYIDTITILRDNQTIELFYFQCRINIFKGALECESRIVFQLAAHVLQATHGDYVSDAIALADLKNLQVVPVRTLQEHPTLSFCEEEIIREYKNLDGLTKGDAVIGYLRIIESLPMYGVHYYDVKDKEQIPWKLGLSHKGAAQYDFHDKNMPRKRFSWSQMENLFYRDKKFTLEYRDSGPRSAQKASNKTSSNHSLNRLNTIRKSISHR-IKSCVWYASSSTQCRDIWLMAVEQHQFYLDKKQSSRSINGQRCLKEMARNLCRSST----SLVSMKSTGSGIQDNTSETASYYFSLDGDSQNSQVIAAEMDMVSALQARKSFLEKQLIEKRELLNILCLREAELTGIVPSELPESPTHPGRPMRRKVGTSFEFDESLLENPDFERPGTELENMERDFEIQKQIVNAAHRLASDPSAKKKVKKARQLSYQKSLVKLKTMEQQL 524
            ++   E +RC V+ LD++KL + +Q +LL  ELLD+VASHFNLKEKEYFG+ + D      WL+ D++V++HDFPK S PV L+F V+ YI++I+ L+DN TIELF+   +  I+K  ++ +S +VF+LA+++LQ   GD+ S+ +  +DLK L  +P + L+EHP+L++CE+ +I  YK L+G T+G A++ Y+ I+ESLP YGVHYY VKDK+ IPW LGLS+KG  QYD+HDK  PRK F W Q+ENL++R+KKF++E  D  PR                R +  R++  H  I    WYA  +   + IW MA+ QHQFYLD+KQS   I+  R L E+A +L  + T     L +M S G  I  ++    S      G  ++    +A+ DM++AL++R+  LE+ L ++ E L  LCLREAELTG +P E P  P      +RR++GT+F+ DE  +     E    ELE +ER+F IQ QI  AA RLASDP+  KK+KK R+ SY  +L KL+ +E  +
Sbjct:   13 LLMMTEGRRCQVHLLDDRKLELLVQPKLLAKELLDLVASHFNLKEKEYFGIAFTDETGHLNWLQLDRRVLEHDFPKKSGPVVLYFCVRFYIESISYLKDNATIELFFLNAKSCIYKELIDVDSEVVFELASYILQEAKGDFSSNEVVRSDLKKLPALPTQALKEHPSLAYCEDRVIEHYKKLNGQTRGQAIVNYMSIVESLPTYGVHYYAVKDKQGIPWWLGLSYKGIFQYDYHDKVKPRKIFQWRQLENLYFREKKFSVEVHD--PR----------------RASVTRRTFGHSGIAVHTWYACPAL-IKSIWAMAISQHQFYLDRKQSKSKIHAARSLSEIAIDLTETGTLKTSKLANMGSKGKIISGSSGSLLS-----SGSQESDSSQSAKKDMLAALKSRQEALEETLRQRLEELKKLCLREAELTGKLPVEYPLDPGEEPPIVRRRIGTAFKLDEQKILPKGEE---AELERLEREFAIQSQITEAARRLASDPNVSKKLKKQRKTSYLNALKKLQEIENAI 514

The following BLAST results are available for this feature:

BLAST of TCONS_00051168-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00051168-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
FRM4A	1.653e-138	44.05	FERM domain-containing protein 4A OS=Homo sapiens ...	[more]

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TCONS_00051168-protein (polypeptide) - C. hemisphaerica