TCONS_00051174-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00051174-protein
Unique NameTCONS_00051174-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1224

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00051174-protein ID=TCONS_00051174-protein|Name=TCONS_00051174-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1224bp
MLTKFETKSARVKGICFHSKRPWVLASLHNGVIQLWDYRMCTLLERFDEH
DGPVRGIHFHEHQPLFVSGGDDYKIKVWNYKQKKCIFTLLGHLDYIRTTF
FHHEYPWILSCSDDQTIRIWNWQSRNCISVLTGHNHYVMCAQFHPTEDLI
VSASLDQTVRVWDFGGLRRKFVSPGAKAKEETGPKTPGQMDLFGQADAIV
KHVLEGHDRGVNWVAFHPSMPFIVSAADDRQVKLWRMNDAKAWEVDTCRG
HYNNVSSALFHPRQELIISNSEDKSIRVWDMSKRTGVQTFRREHDRFWTL
AAHPTLNLFAAGHDSGMLVFKLERERPAYTVHQNTLYYVKDRYLRMYEFG
TSKDIPVMQFRKGSSKPSPVNLMYNPAERCILLTYATSSTSNDQIYELHL
LPKDIRSSDPETSEGRRAAGIDAIWVARNRFAVLDKTQSVVIKNLKNEVT
KKVQTPPCDKIFYAGTGSLLLRDSDQVMLFDVQQKRVVATVKISKARNVI
WSSDMSYVAVVSKHSIAICNRKMENLCNIHESVKIKGGAWDDSGVLVYTT
SNHIKYTLTNGDSGIIRTLDMPIYITKVKGSSIYCLDRECKTRVLGIDPT
EFKFKLALVNHRYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDE
KTRFGLALECGNLEIALEAAKSLDDKACWEKLSDMALAQGNHQVVEMCYQ
RTKNFDRLSFLYLTTGNSDKLQKMTKISEIRKDVSGHLHNALYTGDVEER
IKVLKQVGQGSLAYLTAATHGLAAECEEIKAQFNLDPEKLPAINPNAKLL
RPPVPILKNESNWPLLTVSKTLFEGAASSMKEGAASSMAAADVGDMGDEG
GWGDSDLVLDEDAGFGDPDEKLEIDEEGGGWDVGDDDLELPADLDVGPMP
AGGGEDYYVPPTRGNNQSQVWCNNSQIPVDHLVAGSFDSAARLMNEQLGV
INFEPYKQLFMSAFSRGRAVSPGLPTTPPMFYHPHRNWKEAGAKAGLPAI
GMKLNDLIQRLQSSYQLTTGGKFADAVEKMHQILLSITLLAVDSKQDVTE
AQQLLSICREYLVGLGMELQRKELPKQTAPQQKRLCEMAAYFTHCNLQPI
HLILTLRTACNLCFKIKNFKTAASFARRLIELGPRPEVAQQTRKILQACE
KNPTNAVDLDYDELNPFSLCCVSYTPIYRGKPEEKCPLCGASYKPEYKGT
VCKICRVAEVGRPASGLKITNSSR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032436XLOC_032436Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00051174TCONS_00051174Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR006692Coatomer_WD-assoc_reg
IPR016391Coatomer_asu
IPR011990TPR-like_helical_dom
IPR010714Coatomer_asu_C
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0005198structural molecule activity
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO:0006886intracellular protein transport
Vocabulary: Cellular Component
TermDefinition
GO:0030117membrane coat
GO:0030126COPI vesicle coat
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0030126 COPI vesicle coat
cellular_component GO:0030117 membrane coat
molecular_function GO:0005515 protein binding
molecular_function GO:0005198 structural molecule activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 150..164
score: 40.73
coord: 267..281
score: 34.5
coord: 108..122
score: 36.74
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 241..280
e-value: 7.8E-6
score: 35.4
coord: 124..163
e-value: 3.3E-11
score: 53.2
coord: 40..79
e-value: 4.2E-6
score: 36.3
coord: 82..121
e-value: 5.4E-7
score: 39.2
coord: 283..321
e-value: 71.0
score: 5.3
coord: 484..520
e-value: 370.0
score: 0.8
coord: 2..37
e-value: 26.0
score: 8.0
coord: 197..236
e-value: 6.0E-7
score: 39.1
IPR001680WD40 repeatPFAMPF00400WD40coord: 245..280
e-value: 2.3E-4
score: 21.8
coord: 46..79
e-value: 2.8E-4
score: 21.5
coord: 84..121
e-value: 1.0E-6
score: 29.2
coord: 202..235
e-value: 3.7E-5
score: 24.3
coord: 126..163
e-value: 1.1E-7
score: 32.2
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 204..245
score: 13.75
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 248..289
score: 14.753
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 47..88
score: 13.382
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 131..163
score: 15.02
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 89..130
score: 11.377
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 187..558
e-value: 4.5E-39
score: 133.7
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 1..79
e-value: 1.4E-16
score: 59.4
NoneNo IPR availableGENE3D1.10.10.670coord: 119..186
e-value: 9.9E-20
score: 69.8
NoneNo IPR availableGENE3D2.40.50.140coord: 80..118
e-value: 2.4E-15
score: 55.4
NoneNo IPR availableCDDcd00200WD40coord: 9..321
e-value: 1.17529E-73
score: 246.093
NoneNo IPR availableSUPERFAMILY101908Putative isomerase YbhEcoord: 475..552
coord: 245..389
IPR006692Coatomer, WD associated regionPFAMPF04053Coatomer_WDADcoord: 345..771
e-value: 6.1E-141
score: 470.4
IPR016391Coatomer alpha subunitPIRSFPIRSF003354Alpha-COPcoord: 1..1221
e-value: 0.0
score: 1848.9
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 595..1160
e-value: 0.002
score: 17.0
IPR010714Coatomer, alpha subunit, C-terminalPFAMPF06957COPI_Ccoord: 820..1222
e-value: 8.6E-170
score: 564.8
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 150..164
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 5..330
score: 49.171
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 200..318
coord: 5..168

Blast
[Close]
BLAST of TCONS_00051174-protein vs. Swiss-Prot (Human)
Match: COPA (Coatomer subunit alpha OS=Homo sapiens GN=COPA PE=1 SV=2)

HSP 1 Score: 1843.94 bits (4775), Expect = 0.000e+0
Identity = 857/1228 (69.79%), Postives = 1024/1228 (83.39%), Query Frame = 0 
Query:    1 MLTKFETKSARVKGICFHSKRPWVLASLHNGVIQLWDYRMCTLLERFDEHDGPVRGIHFHEHQPLFVSGGDDYKIKVWNYKQKKCIFTLLGHLDYIRTTFFHHEYPWILSCSDDQTIRIWNWQSRNCISVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDFGGLRRKFVSPGAKAKEETGPKTPGQMDLFGQADAIVKHVLEGHDRGVNWVAFHPSMPFIVSAADDRQVKLWRMNDAKAWEVDTCRGHYNNVSSALFHPRQELIISNSEDKSIRVWDMSKRTGVQTFRREHDRFWTLAAHPTLNLFAAGHDSGMLVFKLERERPAYTVHQNTLYYVKDRYLRMYEFGTSKDIPVMQFRKGSSKPSPVNLMYNPAERCILLTYATSSTSNDQIYELHLLPKDIRSSDPETSEGRRAAGIDAIWVARNRFAVLDKTQSVVIKNLKNEVTKKVQTPPCDKIFYAGTGSLLLRDSDQVMLFDVQQKRVVATVKISKARNVIWSSDMSYVAVVSKHSIAICNRKMENLCNIHESVKIKGGAWDDSGVLVYTTSNHIKYTLTNGDSGIIRTLDMPIYITKVKGSSIYCLDRECKTRVLGIDPTEFKFKLALVNHRYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFGLALECGNLEIALEAAKSLDDKACWEKLSDMALAQGNHQVVEMCYQRTKNFDRLSFLYLTTGNSDKLQKMTKISEIRKDVSGHLHNALYTGDVEERIKVLKQVGQGSLAYLTAATHGLAAECEEIKAQFNLDPEKLPAINPNAKLLRPPVPILKNESNWPLLTVSKTLFEGAASSMKEGAASSMAAADVGDMGDEGGWG-DSDLVLDEDAGFGDPDEKLEID------EEGGGWDVGDDDLELPADLDVGPMPAGGGED-YYVPPTRGNNQSQVWCNNSQIPVDHLVAGSFDSAARLMNEQLGVINFEPYKQLFMSAFSRGRAVSPGLPTTPPMFYHPHRNWKEAGAKAGLPAIGMKLNDLIQRLQSSYQLTTGGKFADAVEKMHQILLSITLLAVDSKQDVTEAQQLLSICREYLVGLGMELQRKELPKQTAPQQKRLCEMAAYFTHCNLQPIHLILTLRTACNLCFKIKNFKTAASFARRLIELGPRPEVAQQTRKILQACEKNPTNAVDLDYDELNPFSLCCVSYTPIYRGKPEEKCPLCGASYKPEYKGTVCKICRVAEVGRPASGLKIT 1220
            MLTKFETKSARVKG+ FH KRPW+L SLHNGVIQLWDYRMCTL+++FDEHDGPVRGI FH+ QPLFVSGGDDYKIKVWNYK ++C+FTLLGHLDYIRTTFFHHEYPWILS SDDQTIR+WNWQSR C+ VLTGHNHYVMCAQFHPTEDL+VSASLDQTVRVWD  GLR+K +SPGA   +  G      +DLFG  DA+VKHVLEGHDRGVNW AFHP+MP IVS ADDRQVK+WRMN++KAWEVDTCRGHYNNVS A+FHPRQELI+SNSEDKSIRVWDMSKRTGVQTFRR+HDRFW LAAHP LNLFAAGHD GM+VFKLERERPAY VH N L+YVKDR+LR  +F +SKD+ VMQ R GS  P   N+ YNPAE  +LL    S+  N   Y+L+ +PKD  S +P+  EG+R++G+ A+WVARNRFAVLD+  S++IKNLKNE+TKKVQ P CD+IFYAGTG+LLLRD+D + LFDVQQKR +A+VKISK + VIWS+DMS+VA+++KH+I ICNRK++ LCNIHE++++K GAWD+SGV +YTTSNHIKY +T GD GIIRTLD+PIY+T+VKG+++YCLDREC+ RVL IDPTEFKFKLAL+N +YDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRF LALECGN+EIALEAAK+LDDK CWEKL ++AL QGNHQ+VEMCYQRTKNFD+LSFLYL TGN +KL+KM KI+EIRKD+SGH  NALY GDV ER+++LK  GQ SLAYLTAATHGL  E E +K  F+ + E +P I+PNAKLL+PP PI+  ++NWPLLTVSK  FEG  +S  +G A + A  D+  +G E GWG D++L LDED GF +  E L  D      EEGGGWDV ++DLELP +LD+ P  AGG ED ++VPPT+G + +Q+WCNNSQ+PVDH++AGSF++A RL+++Q+GVI F PYKQLF+  ++RGR     LP  P M+ +P+RNWK+AG K G+PA+G+KLNDLIQRLQ  YQLTT GKF +AVEK   ILLS+ LL VD+KQ++ EAQQL++ICREY+VGL +E +RK+LPK+T  QQKR+CEMAAYFTH NLQP+H+IL LRTA NL FK+KNFKTAA+FARRL+ELGP+PEVAQQTRKIL ACEKNPT+A  L+YD  NPF +C  SY PIYRGKP EKCPL GA Y PE+KG +C++  V E+G+   GL+I+
Sbjct:    1 MLTKFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVWNWQSRTCVCVLTGHNHYVMCAQFHPTEDLVVSASLDQTVRVWDISGLRKKNLSPGAVESDVRGITG---VDLFGTTDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAWEVDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLAAHPNLNLFAAGHDGGMIVFKLERERPAYAVHGNMLHYVKDRFLRQLDFNSSKDVAVMQLRSGSKFPV-FNMSYNPAENAVLLCTRASNLEN-STYDLYTIPKDADSQNPDAPEGKRSSGLTAVWVARNRFAVLDRMHSLLIKNLKNEITKKVQVPNCDEIFYAGTGNLLLRDADSITLFDVQQKRTLASVKISKVKYVIWSADMSHVALLAKHAIVICNRKLDALCNIHENIRVKSGAWDESGVFIYTTSNHIKYAVTTGDHGIIRTLDLPIYVTRVKGNNVYCLDRECRPRVLTIDPTEFKFKLALINRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEIALEAAKALDDKNCWEKLGEVALLQGNHQIVEMCYQRTKNFDKLSFLYLITGNLEKLRKMMKIAEIRKDMSGHYQNALYLGDVSERVRILKNCGQKSLAYLTAATHGLDEEAESLKETFDPEKETIPDIDPNAKLLQPPAPIMPLDTNWPLLTVSKGFFEGTIASKGKGGALA-ADIDIDTVGTE-GWGEDAELQLDED-GFVEATEGLGDDALGKGQEEGGGWDV-EEDLELPPELDISPGAAGGAEDGFFVPPTKGTSPTQIWCNNSQLPVDHILAGSFETAMRLLHDQVGVIQFGPYKQLFLQTYARGRTTYQALPCLPSMYGYPNRNWKDAGLKNGVPAVGLKLNDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSVETERKKLPKETLEQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFKTAATFARRLLELGPKPEVAQQTRKILSACEKNPTDAYQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACYSPEFKGQICRVTTVTEIGKDVIGLRIS 1219
The following BLAST results are available for this feature:
BLAST of TCONS_00051174-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
COPA0.000e+069.79Coatomer subunit alpha OS=Homo sapiens GN=COPA PE=... [more]
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