TCONS_00051279-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00051279-protein
Unique NameTCONS_00051279-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length234

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00051279-protein ID=TCONS_00051279-protein|Name=TCONS_00051279-protein|organism=Clytia hemisphaerica|type=polypeptide|length=234bp
MGERYSFSLTTFSPSGKLVQIEYALAAVAAGGPSVGLKAVNGSVIAAEKK
QKSILYDEKTVSKIEMITKHIGMVYSGMGPDFRLLVSEARRIAVNYKLQY
GESIPTSQLVQKVASVMQEYTQSGGVRPFGVSLLVCGFDEETPSLFQCDP
SGAYFAWKATAIGKNYVNGKTFLEKRYNDTLELEDAIHTAILTLKEGFEG
QMNEDNIEVGICDKNGFRKLTPSEIKDYLASILS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032505XLOC_032505Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00051279TCONS_00051279Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000426Proteasome_asu_N
IPR001353Proteasome_sua/b
IPR029055Ntn_hydrolases_N
IPR023332Proteasome_alpha-type
Vocabulary: Cellular Component
TermDefinition
GO:0019773proteasome core complex, alpha-subunit complex
GO:0005839proteasome core complex
Vocabulary: Molecular Function
TermDefinition
GO:0004175endopeptidase activity
GO:0004298threonine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006511ubiquitin-dependent protein catabolic process
GO:0051603proteolysis involved in cellular protein catabolic process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051603 proteolysis involved in cellular protein catabolic process
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
cellular_component GO:0005839 proteasome core complex
cellular_component GO:0019773 proteasome core complex, alpha-subunit complex
molecular_function GO:0004175 endopeptidase activity
molecular_function GO:0004298 threonine-type endopeptidase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000426Proteasome alpha-subunit, N-terminal domainSMARTSM00948Proteasome_A_N_2coord: 5..27
e-value: 3.6E-7
score: 39.8
IPR000426Proteasome alpha-subunit, N-terminal domainPFAMPF10584Proteasome_A_Ncoord: 5..27
e-value: 7.3E-10
score: 38.2
IPR000426Proteasome alpha-subunit, N-terminal domainPROSITEPS00388PROTEASOME_ALPHA_1coord: 5..27
IPR001353Proteasome, subunit alpha/betaPFAMPF00227Proteasomecoord: 29..211
e-value: 1.1E-58
score: 197.8
IPR029055Nucleophile aminohydrolases, N-terminalGENE3D3.60.20.10coord: 3..234
e-value: 8.2E-82
score: 273.5
IPR029055Nucleophile aminohydrolases, N-terminalSUPERFAMILY56235N-terminal nucleophile aminohydrolases (Ntn hydrolases)coord: 4..231
IPR023332Proteasome alpha-type subunitPROSITEPS51475PROTEASOME_ALPHA_2coord: 20..229
score: 80.784
NoneNo IPR availableCDDcd03750proteasome_alpha_type_2coord: 5..230
e-value: 3.07531E-155
score: 432.516

Blast
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BLAST of TCONS_00051279-protein vs. Swiss-Prot (Human)
Match: PSA2 (Proteasome subunit alpha type-2 OS=Homo sapiens GN=PSMA2 PE=1 SV=2)

HSP 1 Score: 390.193 bits (1001), Expect = 1.888e-139
Identity = 185/233 (79.40%), Postives = 208/233 (89.27%), Query Frame = 0 
Query:    1 MGER-YSFSLTTFSPSGKLVQIEYALAAVAAGGPSVGLKAVNGSVIAAEKKQKSILYDEKTVSKIEMITKHIGMVYSGMGPDFRLLVSEARRIAVNYKLQYGESIPTSQLVQKVASVMQEYTQSGGVRPFGVSLLVCGFDEETPSLFQCDPSGAYFAWKATAIGKNYVNGKTFLEKRYNDTLELEDAIHTAILTLKEGFEGQMNEDNIEVGICDKNGFRKLTPSEIKDYLASI 232
            M ER YSFSLTTFSPSGKLVQIEYALAAVA G PSVG+KA NG V+A EKKQKSILYDE++V K+E ITKHIG+VYSGMGPD+R+LV  AR++A  Y L Y E IPT+QLVQ+VASVMQEYTQSGGVRPFGVSLL+CG++E  P LFQ DPSGAYFAWKATA+GKNYVNGKTFLEKRYN+ LELEDAIHTAILTLKE FEGQM EDNIEVGIC++ GFR+LTP+E+KDYLA+I
Sbjct:    1 MAERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAGFRRLTPTEVKDYLAAI 233
The following BLAST results are available for this feature:
BLAST of TCONS_00051279-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PSA21.888e-13979.40Proteasome subunit alpha type-2 OS=Homo sapiens GN... [more]
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