TCONS_00051309-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00051309-protein
Unique NameTCONS_00051309-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length151

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00051309-protein ID=TCONS_00051309-protein|Name=TCONS_00051309-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
MGRMHAKGKGISGSALPYRRSVPTWLKLTSEDVKEQIYKLAKKGLTPSQI
GVILRDSHGVAQVRYVTGNKILRILKTKGLAPSLPEDLYCLIKKAVSVRK
HLERNRKDRDSKFRLILIEARIHRLARYYKTKRVLPPNWKYESSTASALV
A
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032516XLOC_032516Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00051309TCONS_00051309Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012606Ribosomal_S13/S15_N
IPR000589Ribosomal_S15
IPR023029Ribosomal_S15P
IPR009068S15_NS1_RNA-bd
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012606Ribosomal protein S13/S15, N-terminalSMARTSM01386Ribosomal_S13_N_2coord: 1..60
e-value: 2.3E-40
score: 150.1
IPR012606Ribosomal protein S13/S15, N-terminalPFAMPF08069Ribosomal_S13_Ncoord: 1..60
e-value: 2.2E-33
score: 114.0
IPR000589Ribosomal protein S15SMARTSM01387Ribosomal_S15_2coord: 70..149
e-value: 1.5E-11
score: 54.3
IPR000589Ribosomal protein S15PFAMPF00312Ribosomal_S15coord: 74..146
e-value: 3.1E-16
score: 59.2
IPR000589Ribosomal protein S15PROSITEPS00362RIBOSOMAL_S15coord: 98..128
IPR000589Ribosomal protein S15CDDcd00353Ribosomal_S15p_S13ecoord: 70..145
e-value: 4.41727E-25
score: 91.7958
NoneNo IPR availableGENE3D1.10.287.10coord: 27..147
e-value: 2.5E-18
score: 65.7
IPR023029Ribosomal protein S15PHAMAPMF_01343_ARibosomal_S15_Acoord: 3..149
score: 32.29
IPR009068S15/NS1, RNA-bindingSUPERFAMILY47060S15/NS1 RNA-binding domaincoord: 66..142

Blast
[Close]
BLAST of TCONS_00051309-protein vs. Swiss-Prot (Human)
Match: RS13 (40S ribosomal protein S13 OS=Homo sapiens GN=RPS13 PE=1 SV=2)

HSP 1 Score: 284.263 bits (726), Expect = 2.189e-100
Identity = 139/151 (92.05%), Postives = 147/151 (97.35%), Query Frame = 0 
Query:    1 MGRMHAKGKGISGSALPYRRSVPTWLKLTSEDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRYVTGNKILRILKTKGLAPSLPEDLYCLIKKAVSVRKHLERNRKDRDSKFRLILIEARIHRLARYYKTKRVLPPNWKYESSTASALVA 151
            MGRMHA GKG+S SALPYRRSVPTWLKLTS+DVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVR+VTGNKILRILK+KGLAP LPEDLY LIKKAV+VRKHLERNRKD+D+KFRLILIE+RIHRLARYYKTKRVLPPNWKYESSTASALVA
Sbjct:    1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA 151
The following BLAST results are available for this feature:
BLAST of TCONS_00051309-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS132.189e-10092.0540S ribosomal protein S13 OS=Homo sapiens GN=RPS13... [more]
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