TCONS_00051394-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00051394-protein
Unique NameTCONS_00051394-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length211

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00051394-protein ID=TCONS_00051394-protein|Name=TCONS_00051394-protein|organism=Clytia hemisphaerica|type=polypeptide|length=211bp
MRNQPLEDAETDFDYLFKIVLIGDAGVGKTAIVHRFKYNTFVERHASTIG
VDFTIKTMQVDDKKVKLQIWDTAGQERFRTITQSYYRSANGVVLVYDIST
ADSFKNLGRWLEDVKKYAGKCLHQMMIGNKCDLHHRREVSEEEAKNFASH
YGIGDTLETSAKENSNIEEAFWRIAKHLKDLYENEEGLKSSNTQEVILDS
KSVGGSSCCGS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032568XLOC_032568Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00051394TCONS_00051394Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 40..56
score: 34.3
coord: 120..133
score: 37.08
coord: 17..38
score: 46.0
coord: 156..178
score: 38.47
coord: 58..80
score: 55.18
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 22..203
e-value: 5.5E-5
score: 21.8
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 14..181
e-value: 1.5E-32
score: 124.1
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 19..180
e-value: 2.6E-10
score: 12.8
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 17..181
e-value: 2.0E-89
score: 313.1
NoneNo IPR availableGENE3D3.30.70.1390coord: 16..80
e-value: 5.9E-31
score: 105.8
NoneNo IPR availableGENE3D3.40.50.300coord: 81..179
e-value: 4.0E-35
score: 119.4
NoneNo IPR availablePROSITEPS51419RABcoord: 12..211
score: 35.051
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 18..179
e-value: 7.7E-59
score: 197.8
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 15..171
e-value: 1.4E-29
score: 100.9
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 13..191

Blast
[Close]
BLAST of TCONS_00051394-protein vs. Swiss-Prot (Human)
Match: RAB43 (Ras-related protein Rab-43 OS=Homo sapiens GN=RAB43 PE=1 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 3.482e-74
Identity = 112/199 (56.28%), Postives = 144/199 (72.36%), Query Frame = 0 
Query:   13 FDYLFKIVLIGDAGVGKTAIVHRFKYNTFVERHASTIGVDFTIKTMQVDDKKVKLQIWDTAGQERFRTITQSYYRSANGVVLVYDISTADSFKNLGRWLEDVKKYAGKCLHQMMIGNKCDLHHRREVSEEEAKNFASHYGIGDTLETSAKENSNIEEAFWRIAKHLKDLYENEEGLKSSNTQEVI-LDSKSVGGSSCCG 210
            +D+LFK+VL+GDA VGKT +V RFK   F ER  STIGVDFT+KT+++  K+VKLQIWDTAGQERFRTITQSYYRSANG +L YDI+   SF ++  W+EDV+KYAG  + Q++IGNK DL   REVS  EA++ A HY I   +ETSAK++SN+EEAF R+A  L  +  +   L S  + + I L+SK +G    CG
Sbjct:   15 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL--IMRHGGPLFSEKSPDHIQLNSKDIGEGWGCG 211
The following BLAST results are available for this feature:
BLAST of TCONS_00051394-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB433.482e-7456.28Ras-related protein Rab-43 OS=Homo sapiens GN=RAB4... [more]
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