TCONS_00051623-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00051623-protein
Unique NameTCONS_00051623-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length257

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00051623-protein ID=TCONS_00051623-protein|Name=TCONS_00051623-protein|organism=Clytia hemisphaerica|type=polypeptide|length=257bp
MRIKRLKHCKKYVNFYKTTYGFREPYQILVDLTFCQYALTYKVNIKEQVP
KYIEGESQLFSTSCILEEGKQLGKQLGGAVHICKQFKLRKCGHSKAVPAQ
ECILSMIGETNDNHFFVASQDSELRDQLRTIPGVPLLRIHYNALVLEKPS
KDSVTEAQKIDSVKVSASGYEKERLDQLKKMKGLAEDVGVEEQLRKPKKV
KGVNPLAAKKKKAKNGGAFGKQTDPSKKRHRKKTRVAQHVLDELKKQSDG
QQNITSS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032684XLOC_032684Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00051623TCONS_00051623Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006984Fcf1/Utp23
IPR029060PIN_domain-like
Vocabulary: Cellular Component
TermDefinition
GO:0032040small-subunit processome
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0032040 small-subunit processome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006984rRNA-processing protein Fcf1/Utp23PFAMPF04900Fcf1coord: 51..148
e-value: 5.7E-28
score: 97.1
IPR029060PIN domain-likeGENE3D3.40.50.1010coord: 25..151
e-value: 7.2E-12
score: 44.9
IPR029060PIN domain-likeSUPERFAMILY88723PIN domain-likecoord: 25..149
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 194..236
NoneNo IPR availableCDDcd09866PIN_Fcf1-Utp23-Hcoord: 2..147
e-value: 3.80039E-72
score: 218.984

Blast
[Close]
BLAST of TCONS_00051623-protein vs. Swiss-Prot (Human)
Match: UTP23 (rRNA-processing protein UTP23 homolog OS=Homo sapiens GN=UTP23 PE=1 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 1.232e-56
Identity = 94/215 (43.72%), Postives = 146/215 (67.91%), Query Frame = 0 
Query:    1 MRIKRLKHCKKYVNFYKTTYGFREPYQILVDLTFCQYALTYKVNIKEQVPKYIEGESQLFSTSCILEEGKQLGKQLGGAVHICKQFKLRKCGHSK-AVPAQECILSMIGETNDNHFFVASQDSELRDQLRTIPGVPLLRIHYNALVLEKPSKDSVTEAQKIDSVKVSASGYEKERLDQLKKMKGLAEDVGVEEQLRKPKKVKGVNPLAAKKKKAK 214
            M+I R KH KK++ F++  +G REPYQIL+D TFCQ AL  ++ ++EQ+P+Y+ GE+QL +T C+L+E + LGK L GA  I ++ ++R C H K AV   EC+LSM+ E N +H+FVA+QD  L  +++  PGVPL+ I  N +VL+KPS  ++   + ++S ++  S +EKE +  LK+ +GL ++   + + +K KK+ G NPL+  KKK K
Sbjct:    1 MKITRQKHAKKHLGFFRNNFGVREPYQILLDGTFCQAALRGRIQLREQLPRYLMGETQLCTTRCVLKELETLGKDLYGAKLIAQKCQVRNCPHFKNAVSGSECLLSMVEEGNPHHYFVATQDQNLSVKVKKKPGVPLMFIIQNTMVLDKPSPKTIAFVKAVESGQL-VSVHEKESIKHLKEEQGLVKNTE-QSRRKKRKKISGPNPLSCLKKKKK 213
The following BLAST results are available for this feature:
BLAST of TCONS_00051623-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UTP231.232e-5643.72rRNA-processing protein UTP23 homolog OS=Homo sapi... [more]
back to top