TCONS_00051652-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00051652-protein
Unique NameTCONS_00051652-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length434

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00051652-protein ID=TCONS_00051652-protein|Name=TCONS_00051652-protein|organism=Clytia hemisphaerica|type=polypeptide|length=434bp
MTKPLPKKEGGGKGSSGKSEKRKGGGKKINDGGKVTKGHASELGIGQSLS
GNKNQNNKLLSFHAEITGMMYAFGDCKKPAPESVTLVEEIVHHQMSSVLV
QAMEVTAMRGGKFTSIDDILFLMRNNKTKLRRMIRYLRLKDLKSKTVKPT
SPEDEDVLESISGDTSKADSGKRLKLAYDFISSIDSSGELLALFEEDDVI
DEIKVIRAKRAERISCCLDSQGYLEYSEARQMSFSKKITKFKDWLGIGTN
IDIKASTAVIEILSNLAYETVNEIVDLALLVKEDQERTNPSQVNMPVSIN
RLSELAKNSSSKQPQIPKGALPTPTHSPPTTPNAQPSSTNGSSTTSLTSP
VSGGLASSLGTAYLASSLSGLVKPQKAKKKRLKHNAVINADLNSSRLTPS
HIREAIRRYQMPKTPITHFSGFPRATLAHRTLCL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032694XLOC_032694Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00051652TCONS_00051652Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003195TFIID_TAF13
IPR009072Histone-fold
Vocabulary: Biological Process
TermDefinition
GO:0006366transcription from RNA polymerase II promoter
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006366 transcription from RNA polymerase II promoter
molecular_function GO:0046982 protein heterodimerization activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003195Transcription initiation factor IID, subunit 13PFAMPF02269TFIID-18kDacoord: 61..148
e-value: 5.9E-23
score: 80.6
IPR003195Transcription initiation factor IID, subunit 13CDDcd07978TAF13coord: 61..148
e-value: 1.07435E-27
score: 104.149
NoneNo IPR availableGENE3D1.10.20.10coord: 219..415
e-value: 3.4E-5
score: 23.4
NoneNo IPR availableGENE3D1.10.20.10coord: 62..104
e-value: 6.0E-14
score: 51.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..37
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 305..351
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 146..168
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 62..104

Blast
[Close]
BLAST of TCONS_00051652-protein vs. Swiss-Prot (Human)
Match: SUPT3 (Transcription initiation protein SPT3 homolog OS=Homo sapiens GN=SUPT3H PE=1 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 1.762e-67
Identity = 115/246 (46.75%), Postives = 172/246 (69.92%), Query Frame = 0 
Query:   40 ASELGIGQSLSGNKNQNNKLLSFHAEITGMMYAFGDCKKPAPESVTLVEEIVHHQMSSVLVQAMEVTAMRGGKFTSIDDILFLMRNNKTKLRRMIRYLRLKDLKSKTVKPTSPEDEDVLES-ISGDTSKADSGKRLKLAYDFISSIDSSGELLALFEEDDVIDEIKVIRAKRAERISCCLDSQGYLEYSEARQMSFSKKITKFKDWLGIGTNIDIKASTAVIEILSNLAYETVNEIVDLALLVKED 284
            AS +    S SG      K +SF  E+  MMY+ GD ++P  E+  LVE++VH Q+ ++L QA EV+ +RG +  + +D+LFLMR +K KLRR+++Y+ ++D KSK VK    +++D+LE  +SG     ++ KR K+A DF++SID +GELLA+F EDD IDE+K  R +RAER +  +DS  Y E+ E+RQ+SFSKK +KF+DWL   ++++IK +   +EIL+ LAYETV ++VDLALLV++D
Sbjct:   88 ASPMSTATSSSGRST--GKSISFATELQSMMYSLGDARRPLHETAVLVEDVVHTQLINLLQQAAEVSQLRGARVITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGI--DEDDLLEDKLSGSN---NANKRQKIAQDFLNSIDQTGELLAMF-EDDEIDEVKQERMERAERQTRIMDSAQYAEFCESRQLSFSKKASKFRDWLDC-SSMEIKPNVVAMEILAYLAYETVAQLVDLALLVRQD 324
The following BLAST results are available for this feature:
BLAST of TCONS_00051652-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SUPT31.762e-6746.75Transcription initiation protein SPT3 homolog OS=H... [more]
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