TCONS_00051733-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00051733-protein
Unique Name	TCONS_00051733-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	432

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00051733-protein ID=TCONS_00051733-protein|Name=TCONS_00051733-protein|organism=Clytia hemisphaerica|type=polypeptide|length=432bp
MNMEQSDLKTFCNALHEKFSSQYDFDNLDNIIVRSLNCPQQSLDKRKIIG
LDHCSIKNAGNYDDIANSCPMVQELDVSSNYFEDWSEIINITKCLRHLTC
LNVSHNPLDRDTLLQHDHNLSTPQKSIHSLVINNTGIDFQSLLKLLDIYP
SVAVLHFCINDISSIPGNLNKQYENVTTVSMAKNNIKTWADIRKIGKLFP
NLVSLNISENLFKEIKYEKNSNDFCHLKNLNIMECPIDDWESIENLQHLP
QLRELRIKGCPIYAKKSLTEKQQRCLTVARLPNVTKLNGSNVEDEEREDA
ERLFIRFHMKGENKPTRYQDLIQTYGKLDELAEVNFDRSFIVNVLVKGDV
ESPFLYSLDCSQTVRSLYKELGTRLKLKKNKFNLVHFEQEEEENDSTYVG
RKMKKSNVQRVTSYYVREGDSVQVIRLDLDID

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_032754	XLOC_032754	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00051733	TCONS_00051733	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR032675	L_dom-like
IPR001611	Leu-rich_rpt

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain, L domain-like	GENE3D	3.80.10.10		coord: 8..117 e-value: 1.3E-6 score: 27.2
IPR032675	Leucine-rich repeat domain, L domain-like	GENE3D	3.80.10.10		coord: 118..306 e-value: 7.2E-23 score: 80.0
IPR001611	Leucine-rich repeat	PFAM	PF13516	LRR_6	coord: 96..108 e-value: 0.77 score: 9.9
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 41..280

Blast

[Close]

BLAST of TCONS_00051733-protein vs. Swiss-Prot (Human)
Match: TBCEL (Tubulin-specific chaperone cofactor E-like protein OS=Homo sapiens GN=TBCEL PE=1 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 1.163e-59
Identity = 142/444 (31.98%), Postives = 230/444 (51.80%), Query Frame = 0

Query:    3 MEQSDLKTFCNALHEKFSSQ-YDFDNLDNIIVRSLNCPQQS-----LDKRKIIGLDHCSIKNAGNYDDIANSCPMVQELDVSSNYFEDWSEIINITKCLRHLTCLNVSHNPLDRDTLLQHDHNLSTPQKSIHSLVINNTGIDFQSLLKLLDIYPSVAVLHFCINDISSIPGNLNKQYENVTTVS----------MAKNNIKTWADIRKIGKLFPNLVSLNISENLFKEIKYEKNS--NDFCHLKNLNIMECPIDDWESIENLQHLPQLRELRIKGCPIYAKKSLTEKQQRCLTVARLPNVTKLNGSNVEDEEREDAERLFIRFH--MKGENKPTRYQDLIQTYGKLDELAEVNF--DRSFIVNVLVKGDVESPFLYSLDCSQTVRSLYKELGTRLKLKKNKFNLVHFEQEEEENDSTYVGRKMKKSNVQRVTSYYVREGDSVQV 424
            M+Q   ++F   L EK+S + + +     + V     PQ S     L+   ++ L+ C I  AG+  +IA  C  V ELD+S N  EDW E+  I   +  L  LN+S NPL+   L   +   +     +  LV+NN+   ++++  +L   P +  L  C+ND           YE V+  S          +  NN++ W +IRK+G +FP+L +L ++ N    I+   +S    F +L+++++ +  +  WE I+ L   P+L E+R+ G P+   +  T +++R L +ARLP+V+KLNGS V D ERED+ER FIR++  +  E  P RY +LI  YGKL+ LAEV+     S  V V     VE     S+   QTV  L K+L T ++L  +   L +F+ E     + +   +MK S+ + + S+ +R+GD + V
Sbjct:    1 MDQPSGRSFMQVLCEKYSPENFPYRRGPGMGVHVPATPQGSPMKDRLNLPSVLVLNSCGITCAGDEKEIAAFCAHVSELDLSDNKLEDWHEVSKIVSNVPQLEFLNLSSNPLNLSVL---ERTCAGSFSGVRKLVLNNSKASWETVHMILQELPDLEELFLCLND-----------YETVSCPSICCHSLKLLHITDNNLQDWTEIRKLGVMFPSLDTLVLANNHLNAIEEPDDSLARLFPNLRSISLHKSGLQSWEDIDKLNSFPKLEEVRLLGIPLL--QPYTTEERRKLVIARLPSVSKLNGSVVTDGEREDSERFFIRYYVDVPQEEVPFRYHELITKYGKLEPLAEVDLRPQSSAKVEVHFNDQVEE---MSIRLDQTVAELKKQLKTLVQLPTSNMLLYYFDHE-----APFGPEEMKYSS-RALHSFGIRDGDKIYV 419

The following BLAST results are available for this feature:

BLAST of TCONS_00051733-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00051733-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TBCEL	1.163e-59	31.98	Tubulin-specific chaperone cofactor E-like protein...	[more]

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TCONS_00051733-protein (polypeptide) - C. hemisphaerica