TCONS_00051857-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00051857-protein
Unique NameTCONS_00051857-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length371

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00051857-protein ID=TCONS_00051857-protein|Name=TCONS_00051857-protein|organism=Clytia hemisphaerica|type=polypeptide|length=371bp
XISNPNVAPEDDEKFLYGENSEKKSSQENGDAEMKDVNGNAGGEDEDEFE
DSDDDDDDNIQVHIGEVNTANQFGTPTSNWKKDGQNATGAVGAPATGAVA
AAAAAAAKPGTQLNQPGQKKIDVNAVGQINGQPIYEFDMDAEQDEKAWRK
PGADISDYFNYGFTEETWKQYCEKQRRMRLESVRTPYTVTAAPPTVVHQA
HPPAHAHTHTHAQPPQPLEFEVLPDGRTRVKAGPPPDRKVEGSIHVLGSD
DARRKQKEDELLALALGQPRMIQQPFGGPRPIYTALPGGGMVLNENQDGQ
SQQPGQIQSMGAPSSMGGPVMGPSGVQYLPAGANIVPLGPGQMFPPGGPQ
XSYLYEFFEAKMTVNLYPFIQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032819XLOC_032819Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00051857TCONS_00051857Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007854Fip1
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007854Pre-mRNA polyadenylation factor Fip1PFAMPF05182Fip1coord: 136..179
e-value: 1.5E-22
score: 78.7

Blast
[Close]
BLAST of TCONS_00051857-protein vs. Swiss-Prot (Human)
Match: FIP1 (Pre-mRNA 3'-end-processing factor FIP1 OS=Homo sapiens GN=FIP1L1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.918e-21
Identity = 53/133 (39.85%), Postives = 74/133 (55.64%), Query Frame = 0 
Query:   60 IQVHIGEVNT-ANQFGTPTSNWKKDGQNATGAVGAPATGAVAAAAAAAAKPGTQLNQPGQKKIDVNAVGQINGQPIYEFDMDAEQDEKAWRKPGADISDYFNYGFTEETWKQYCEKQRRMRLESVRTPYTVTA 191
            + V IG++ T A Q+G+  +              AP    +          GT++     K +D++A G ING P+ E D+D+ +D K WRKPGAD+SDYFNYGF E+TWK YCEKQ+R+R+     P T T 
Sbjct:   96 VHVTIGDIKTGAPQYGSYGT--------------APVNLNIKTGGRVYGTTGTKV-----KGVDLDAPGSINGVPLLEVDLDSFED-KPWRKPGADLSDYFNYGFNEDTWKAYCEKQKRIRMGLEVIPVTSTT 208
The following BLAST results are available for this feature:
BLAST of TCONS_00051857-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FIP12.918e-2139.85Pre-mRNA 3'-end-processing factor FIP1 OS=Homo sap... [more]
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