TCONS_00052293-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052293-protein
Unique NameTCONS_00052293-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length628

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052293-protein ID=TCONS_00052293-protein|Name=TCONS_00052293-protein|organism=Clytia hemisphaerica|type=polypeptide|length=628bp
MKVHVVVSDESSSETLSTCENASGRPLGSQSIRGNGANEKSADRIVINVG
GTRHETFRSTLRVYPDTRLGWLSIDGSDVSDAFDPVLNEYFFDRHPTAFN
QIMNFYRTGKLHTPADICGPLFEEELNFWGLDEKAMEPCCWPKYTEHRDA
QENLKVFDSPLLNNQHDDDEIEQPAISVSRIPNYKEPEDQGFKSRFLKVF
RPSYFNSIRWLSKKKLIWAVMEGHSERRPMLSKGVGFISLMFIVLSVLSL
FFHSMLLVISDKAESNHELFTYLLLALDYLTFAWMSIELIIRFVSSPNRI
QFLISFYTIVDLLTLITYALQFNHGMDYHRTKDGVIDSNSITTDYKNIEM
FSIVRLVRLVRFFRLSVGLQIFKHTIIASSRELLLLVLLLLLPVALFATI
VYFFERETNTGKFRTIPESIWWAVITITTVGYGDMSPETTWGKIFGIICA
VFSVFILALPVSIIGTNFTLFYNYAQARMKLPKRPKLALVGAANALRADT
SQHSLSPEPGESEAEGGDTNSQDGEEAAPKIDLPKINLGSDPDFNANITS
KRFRRERLSLFASGPTRQSTRRSKSVGNSVASKIRQRQRNGTSASQKSKG
STPSSEXEIRIHKMAKRRRRKLIYQKLI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033080XLOC_033080Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052293TCONS_00052293Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003974K_chnl_volt-dep_Kv3
IPR028325VG_K_chnl
IPR003968K_chnl_volt-dep_Kv
IPR000210BTB/POZ_dom
IPR005821Ion_trans_dom
IPR003131T1-type_BTB
IPR011333SKP1/BTB/POZ
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO:0055085transmembrane transport
GO:0006811ion transport
GO:0051260protein homooligomerization
Vocabulary: Molecular Function
TermDefinition
GO:0005249voltage-gated potassium channel activity
GO:0005515protein binding
GO:0005216ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0008076voltage-gated potassium channel complex
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0006813 potassium ion transport
biological_process GO:0051260 protein homooligomerization
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
cellular_component GO:0008076 voltage-gated potassium channel complex
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005515 protein binding
molecular_function GO:0005249 voltage-gated potassium channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003974Potassium channel, voltage dependent, Kv3PRINTSPR01498SHAWCHANNELcoord: 123..144
score: 65.91
coord: 105..120
score: 77.78
coord: 478..492
score: 34.44
coord: 90..103
score: 58.33
IPR028325Voltage-gated potassium channelPRINTSPR00169KCHANNELcoord: 302..322
score: 22.19
coord: 413..435
score: 64.28
coord: 226..254
score: 19.55
coord: 442..468
score: 46.51
coord: 382..405
score: 43.69
coord: 276..299
score: 29.21
coord: 353..379
score: 39.21
coord: 89..108
score: 56.7
IPR003968Potassium channel, voltage dependent, KvPRINTSPR01491KVCHANNELcoord: 89..99
score: 70.83
coord: 453..464
score: 47.64
coord: 382..396
score: 40.0
IPR000210BTB/POZ domainSMARTSM00225BTB_4coord: 43..147
e-value: 1.5E-11
score: 54.4
NoneNo IPR availableGENE3D1.20.120.350coord: 230..381
e-value: 4.4E-14
score: 51.8
NoneNo IPR availableGENE3D3.30.710.10coord: 39..157
e-value: 4.8E-30
score: 103.6
NoneNo IPR availableGENE3D1.20.5.110coord: 434..470
e-value: 1.6E-11
score: 43.2
NoneNo IPR availableGENE3D1.10.287.70coord: 382..432
e-value: 6.2E-18
score: 64.2
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 237..469
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 239..473
e-value: 5.6E-27
score: 94.4
IPR003131Potassium channel tetramerisation-type BTB domainPFAMPF02214BTB_2coord: 45..139
e-value: 4.9E-28
score: 97.2
IPR011333SKP1/BTB/POZ domainSUPERFAMILY54695POZ domaincoord: 44..149

Blast
[Close]
BLAST of TCONS_00052293-protein vs. Swiss-Prot (Human)
Match: KCNC1 (Potassium voltage-gated channel subfamily C member 1 OS=Homo sapiens GN=KCNC1 PE=1 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 7.212e-90
Identity = 173/468 (36.97%), Postives = 257/468 (54.91%), Query Frame = 0 
Query:   42 ADRIVINVGGTRHETFRSTLRVYPDTRLGWLSIDGSDVSDAFDPVLNEYFFDRHPTAFNQIMNFYRTGKLHTPADICGPLFEEELNFWGLDEKAMEPCCWPKYTEHRDAQENLKVFDSPLLNNQHDDDEIEQPAISVSRIPNYKEPEDQGFKSRFLKV-----FRPSYFNSIRWLSKKKLIWAVMEGHSERRPMLSKGVGFISLMFIVLSVLSLFF--HSMLLVISDKAE----SNHELFTY--------LLLALDYLTFAWMSIELIIRFVSSPNRIQFLISFYTIVDLLTLITYALQFN-HGMDYHRTKDGVIDSNSITTDYKNIEMFSIVRLVRLVRFFRLS---VGLQIFKHTIIASSRELLLLVLLLLLPVALFATIVYFFER---------ETNTGKFRTIPESIWWAVITITTVGYGDMSPETTWGKIFGIICAVFSVFILALPVSIIGTNFTLFYNYAQA 477
            ++RIVINVGGTRH+T+RSTLR  P TRL WL+   +     +DP  +E+FFDRHP  F  I+N+YRTGKLH PAD+CGPL+EEEL FWG+DE  +EPCCW  Y +HRDA+E L  F    L+N  DD + + P  S        + ED+   ++ L +      RP  F    W   +  IWA+ E     R   ++ V F SL FI++S+ +     H     I +K E     N     Y         L  ++ +   W + E ++R +  PN+++F+ +   I+D + ++ + L+    G+     KD              +    +VR VR++R F+L+   VGL++  HT+ AS+ E LLL++ L L V +FAT++Y+ ER          +    F+ IP   WWAV+T+TT+GYGDM P+T  G + G +CA+  V  +A+PV +I  NF ++Y+ A A
Sbjct:    7 SERIVINVGGTRHQTYRSTLRTLPGTRLAWLAEPDAHSHFDYDPRADEFFFDRHPGVFAHILNYYRTGKLHCPADVCGPLYEEELAFWGIDETDVEPCCWMTYRQHRDAEEALDSFGGAPLDNSADDADADGPGDS-------GDGEDELEMTKRLALSDSPDGRPGGF----WRRWQPRIWALFEDPYSSR--YARYVAFASLFFILVSITTFCLETHERFNPIVNKTEIENVRNGTQVRYYREAETEAFLTYIEGVCVVWFTFEFLMRVIFCPNKVEFIKNSLNIIDFVAILPFYLEVGLSGLSSKAAKD-------------VLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLLLIIFLALGVLIFATMIYYAERIGAQPNDPSASEHTHFKNIPIGFWWAVVTMTTLGYGDMYPQTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMA 448
The following BLAST results are available for this feature:
BLAST of TCONS_00052293-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNC17.212e-9036.97Potassium voltage-gated channel subfamily C member... [more]
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