TCONS_00052338-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00052338-protein
Unique Name	TCONS_00052338-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	828

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00052338-protein ID=TCONS_00052338-protein|Name=TCONS_00052338-protein|organism=Clytia hemisphaerica|type=polypeptide|length=828bp
MVRIFIKGGVWSNTEDEILKAAVMKYGKNQWSRIASLLHKKSGKQCKARW
YEWLDPSIKKTEWSREEDEKLLHLAKLMPTQWRTIAPLVGRTATQCLERY
EYLLDQAQKKEGDGGSSEDPRKLRPGEIDPAPETKPARPDPIDMDEDEME
MLSEARARLANTQGKKAKRKAREKQLEEARRLASLQKRRELRAAGIQINR
YRKKKRGVDYNAEIPFERKPAQGFYDTSNEQVKALEPDYKKLRQEHMDDK
RRDIQEERDRRKDKDKQKKRKENDLPGAIASINKMMSQENTKKRSKLVLP
TPQVTDAELEEVVKLGIASEQAKEFVEGESESATKGLLSDYSVTPGTNLP
MRTPRTPAQQDNILQEAQNILNLQQVDTPLKGGLNTPMYESNFDGATPQR
QIQQTPNMMITTPYRTPGPEGQGFTPRGMTPKIGGTPGAGATPSVRDNLS
INREDAFYDDLSSAKQVQMENKNQLLAGLSSLPKPTNDFEIVVPEKFEID
MEEPTDPNFVEDMADVEARNYENLREKEAAEFRRRAQSVQRNMPRPSDVN
TSVLRPNHMKVDLNSLQMAEELIKEEMIKMLRNDIVSHPTETQMFALNQK
KTRAAAQTVMATNKRVLSEEPLEDVTDDEIKAARELLKEEIEVVKQGMNH
GDLTMEAYTKVWDECYGQLLFLPNQQRYTRSALASKKDRVESAEKRLEIY
RGQMTEDAKRAAKSEKKLKVLLGGYQSRAIALNKQISDLHDQLEQSRIQC
DTFDMLKKQEKHAVPRRLAALEEDVTRQTDREKALQHQFSDLLYERDRLK
QLKKRRDEADRTRRSDVEGRSPERRDQV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_033092	XLOC_033092	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00052338	TCONS_00052338	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR021786	Cdc5p/Cef1
IPR017930	Myb_dom
IPR009057	Homeobox-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 683..703
None	No IPR available	COILS	Coil	Coil	coord: 247..274
None	No IPR available	COILS	Coil	Coil	coord: 768..788
None	No IPR available	COILS	Coil	Coil	coord: 168..188
None	No IPR available	PFAM	PF13921	Myb_DNA-bind_6	coord: 11..71 e-value: 3.0E-14 score: 52.9
None	No IPR available	GENE3D	1.10.10.60		coord: 61..190 e-value: 1.3E-11 score: 44.2
None	No IPR available	GENE3D	1.10.10.60		coord: 4..60 e-value: 4.5E-16 score: 57.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 325..350
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 237..295
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 803..828
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 534..553
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..144
None	No IPR available	CDD	cd11659	SANT_CDC5_II	coord: 56..108 e-value: 1.23709E-30 score: 114.329
None	No IPR available	CDD	cd00167	SANT	coord: 11..54 e-value: 7.61068E-13 score: 63.3634
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 59..106 e-value: 8.7E-12 score: 55.2 coord: 7..56 e-value: 3.2E-16 score: 69.9
IPR021786	Pre-mRNA splicing factor component Cdc5p/Cef1	PFAM	PF11831	Myb_Cef	coord: 405..656 e-value: 3.9E-68 score: 229.5
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 59..108 score: 15.016
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 3..58 score: 22.608
IPR009057	Homeobox domain-like	SUPERFAMILY	46689	Homeodomain-like	coord: 34..111

Blast

[Close]

BLAST of TCONS_00052338-protein vs. Swiss-Prot (Human)
Match: CDC5L (Cell division cycle 5-like protein OS=Homo sapiens GN=CDC5L PE=1 SV=2)

HSP 1 Score: 959.133 bits (2478), Expect = 0.000e+0
Identity = 500/809 (61.80%), Postives = 629/809 (77.75%), Query Frame = 0

Query:    1 MVRIFIKGGVWSNTEDEILKAAVMKYGKNQWSRIASLLHKKSGKQCKARWYEWLDPSIKKTEWSREEDEKLLHLAKLMPTQWRTIAPLVGRTATQCLERYEYLLDQAQKKEGDGGSSEDPRKLRPGEIDPAPETKPARPDPIDMDEDEMEMLSEARARLANTQGKKAKRKAREKQLEEARRLASLQKRRELRAAGIQINRYRKKKRGVDYNAEIPFERKPAQGFYDTSNEQVKALEPDYKKLRQEHMDDKRRDIQEERDRRKDKDKQKKRKENDLPGAIASINKMMSQENTKKRSKLVLPTPQVTDAELEEVVKLGIASEQAKEFVE--GESESATKGLLSDYSVTPGTNLPMRTPRTPAQQDNILQEAQNILNLQQVDTPLKGGLNTPMYESNFDGATPQRQIQQTPNMMITTPYRTPGPEGQGFTPR-GMTPK--IGGTPGAGATPSVRDNLSINREDAF--YDDLSSAKQVQMENKNQLLAGLSSLPKPTNDFEIVVPEKFEIDMEE-PTDPNFVEDMADVEARNYENLREKE-AAEFRRRAQSVQRNMPRPSDVNTSVLRPNHMKVDLNSLQMAEELIKEEMIKMLRNDIVSHPTETQMFALNQKKTRAAAQTVMATNKRVLSEEPLEDVTDDEIKAARELLKEEIEVVKQGMNHGDLTMEAYTKVWDECYGQLLFLPNQQRYTRSALASKKDRVESAEKRLEIYRGQMTEDAKRAAKSEKKLKVLLGGYQSRAIALNKQISDLHDQLEQSRIQCDTFDMLKKQEKHAVPRRLAALEEDVTRQTDREKALQHQFSDLLYERDRLK 800
            M RI IKGGVW NTEDEILKAAVMKYGKNQWSRIASLLH+KS KQCKARWYEWLDPSIKKTEWSREE+EKLLHLAKLMPTQWRTIAP++GRTA QCLE YE+LLD+A +++ +  +++DPRKL+PGEIDP PETKPARPDPIDMDEDE+EMLSEARARLANTQGKKAKRKAREKQLEEARRLA+LQKRRELRAAGI+I + RK+KRGVDYNAEIPFE+KPA GFYDTS E  +AL+ D++KLRQ+ +D + R  +E RDR+KDK   K++KE+DLP AI   + +   E TKKRSKLVLP PQ++DAEL+EVVK+G ASE A++  E  G + SA+  LLS+Y+VT   ++ +RTPRTPA QD ILQEAQN++ L  VDTPLKGGLNTP++ES+F G TPQRQ+ QTPN +++TP+RTP    +G TPR G TPK  I  TP  G TP +RD L+IN ED    Y D S  KQ++ E++  L  GL  LP P NDFEIV+PE  E ++EE   D  ++ED ADV+AR  + +R+ E   E +R  ++VQ+++PRPS+VN ++LRP +++  L  LQ +EELIK+EMI ML  D++ HP E    + N+K       T  + +   L   P E  + +E+K A+++L +E+EVVKQGM+HG+L+ EAY +VW+ECY Q+L+LP Q RYTR+ LASKKDR+ES EKRLEI RG MT +AKRAAK EKK+K+LLGGYQSRA+ L KQ++DL DQ+EQ+ ++  TF+ LKK E  A+PRRL  L+EDV RQ +REK LQH+++DLL E++ LK
Sbjct:    1 MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDKAAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKKDKQHLKRKKESDLPSAILQTSGV--SEFTKKRSKLVLPAPQISDAELQEVVKVGQASEIARQTAEESGITNSASSTLLSEYNVT-NNSVALRTPRTPASQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPFRTPSNGAEGLTPRSGTTPKPVINSTP--GRTP-LRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGLLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARK-QAIRDAERVKEMKRMHKAVQKDLPRPSEVNETILRPLNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEP---SGNKKGKTVGFGTNNSEHITYLEHNPYEKFSKEELKKAQDVLVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLYLPGQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKHEDSAIPRRLECLKEDVQRQQEREKELQHRYADLLLEKETLK 799

The following BLAST results are available for this feature:

BLAST of TCONS_00052338-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00052338-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CDC5L	0.000e+0	61.80	Cell division cycle 5-like protein OS=Homo sapiens...	[more]

You are here

TCONS_00052338-protein (polypeptide) - C. hemisphaerica