TCONS_00052357-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00052357-protein
Unique Name	TCONS_00052357-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1479

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00052357-protein ID=TCONS_00052357-protein|Name=TCONS_00052357-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1479bp
MPGKKKKEDQFELTTHLTRNEEDHHEEEDHLHDEIHHEQMQLEENNVEAN
NIEGAEEQDNDNEEQELHPCSFPIKRRIRRKKLNSKGNSWKGKRFSENHS
ESNASQNSSTGNLKGLVDSSSSSSDSETEGASCHQEVEGEEDSPRNTDAY
GQMEFVGSARRTRARYIRISHETSSEKLSQLLKAMNLTQTPKILVSVVGE
MKELDLNQGTIENLKDQLGKVCDKIGAMQKESWFLTSAIDQGATKLIAEA
VEGYRFKDTNVIGVVSWKSVSYKSRLKQKSDKIRIPTYPVNESQTQSMIS
NEEIQEDEESDEEMDFLKMESEISDMINNDDLCNIPQPTSVVDEDEIKPV
SIPEQLGSIPEDEDETDVDSFKAREHSSSGPIASSSSAPEQRTEGAGQHT
DLNKFRSASDRQTKYDREISSDHQGELQDVFEDGPLSQKAFAQAHWQSES
ILRPNGKRNKYYLNKDHTHFLLVDTGDCEKKDNRADIEFRCKLERLIVDK
QIQKINRKRRELHDRRFRTLGGNFEETNFVPAVQLVINGGYKTMTQIRMT
LFPNNGGAPTMPLVVVADSGRASKWIATFCELADQERKQRYILRERRNDL
KREIMKCYPIKANEIVGILEEVATERRNFVTIYRQGNNLDDKILQALINT
NRNQKTKSQKTIEHHKIVLLWNSPEIAEKDFRKMLNHANSAKAHERKELM
RTAHQHMTEIFTRALKKQNVQFFRMLLKLDMDITRFTHRMLIDLYDKPCS
TGSSNVISSFKKGSSNIFTRCCHKLSNEPLALDTLFYRTYKNTKARTEIE
REMLQFVQRTINSRILSLELVDYVKNDRNACLLDPFKDLFLWAVTCNKME
IAKALWEHGENPIAKALIARKIFLKTAEAYTDHSQYDAHIHAKLEENARY
FSDKAIQLLEQCSKEKTEDTKQLINKPIPGWGKKTLIELAALSDFQEFIC
LPRCKDINDQKWRAGIVPMDGEFINLKLSFTVILLFFPWLFFIRYKKDQI
HSCNRCKEVHDGSAGPPAQPIQRRSTPLKCLFTKAGDKIKAFFSAPISKF
WCNFISYIYFLMFFNFMALNQLDEGPGKLAYVLLCYIIAFTLEEIRQIKD
EIGLKFKHKLRRYFKSTWNKLETVSIVIFIGAFTLHFQPIEREEYRSYAR
FMYSAVLFLCVMKLLQLLSLFRKIGVYVVMLQKMLIDVAYFVLILAVLVI
GYAVARFSVLYPKERFGFSSKSTPNLMRKVFLVPIFQLFGESFIDKPEEA
EGANNITVFGTPEYNNIEGYGEVVVLWFTFIYMVLTSLLLVNMLIAVFNF
TYSVVEKNADEVWHWQNYNLVREYEGKSRFPAPFSILSHLRDLVVYLWQK
IKERKPKPDTSSGNDKTDSKGCSTKHRSLNEYFNEQAELNELIQFERDCL
GHHLNELIKQEKAQEEAQRKILKQLTTETNKKQYWRWPAINLSRRKNSIT
GLDVARPNSQPTSPLTRAFTSPPDLVKPK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_033100	XLOC_033100	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00052357	TCONS_00052357	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005821	Ion_trans_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005216	ion channel activity

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport
GO:0006811	ion transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006811	ion transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0005216	ion channel activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1405..1428
None	No IPR available	COILS	Coil	Coil	coord: 211..231
None	No IPR available	COILS	Coil	Coil	coord: 583..603
None	No IPR available	GENE3D	1.20.120.350		coord: 9..1173 e-value: 2.1E-6 score: 26.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 292..314
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..155
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1355..1374
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1450..1479
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 328..423
IPR005821	Ion transport domain	PFAM	PF00520	Ion_trans	coord: 1050..1308 e-value: 6.2E-16 score: 58.3

Blast

[Close]

BLAST of TCONS_00052357-protein vs. Swiss-Prot (Human)
Match: TRPM3 (Transient receptor potential cation channel subfamily M member 3 OS=Homo sapiens GN=TRPM3 PE=2 SV=4)

HSP 1 Score: 258.84 bits (660), Expect = 1.291e-69
Identity = 239/966 (24.74%), Postives = 436/966 (45.13%), Query Frame = 0

Query:  463 LNKDHTHFLLVDTGDCEKKDNRADIEFRCKLERLIVDKQIQKINRKRR---ELHDRRFRTLGGNFEETNF-----VPAVQLVINGGYKTMTQIRMTLFPNNGGAPTMPLVVVADSGRASKWIATFCELADQERKQRYILRER-RNDLKREIMKCYP---IKANEIVGILEEVATERRNFVTIYRQGN----NLDDKILQALINTNRNQKTKSQKTIEHHKIVLLWNSPEIAEKDFRKMLNHANSAKAHERKELMRTAHQHMTEIFTRALKKQNVQFFRMLLKLDMDITRF-THRMLIDLYDKPCSTGSSN----VISSFKKGSSNIFTRCCHKLSNEPLALDTLFYRTYK--NTKARTEIEREMLQFVQRTINSRILSLELVDYVKNDRNACL---------LD---------PFKDLFLWAVTCNKMEIAKALWEHGENPIAKALIARKIFLKTAEAYTDHSQYDAHIHAKLEENARYFSDKAIQLLEQCSKEKTEDTKQLINKPIPGWGKKTLIELAALSDFQEFICLPRCKDINDQKWRAGIVPMDGEFINLKLSFTVILLFFPWLFFIRYK-KDQIHSCNRCKEVH---------------------------DGSAGPPAQPIQRRSTPLKCLFTKAGDKIKAFFSAPISKFWCNFISYIYFLMFFNFMALNQLDEGPGKLAYVLLCYIIAFTLEEIRQIKDEIGLKFKHKLRRYFKSTWNKLETVSIVIFIGAFTLHFQPIEREEYRSYARFMYSAVLFLCVMKLLQLLSLFRKIGVYVVMLQKMLIDVAYFVLILAVLVIGYAVARFSVLYPKERFGFSSKSTPNLMRKVFLVPIFQLFGESFIDKPEEAEGANNITVFGTPEYNNIEGYGEVVVLWFTFIYMVLTSLLLVNMLIAVFNFTYSVVEKNADEVWHWQNYNLVREYEGKSRFPAPFSILSHLRDLVVYLWQKIKERKPKPD 1359
            LN  H+HF+L D G   K    A+++ R +LE+ I    +QKIN +      L  R F +  G+ +  +      VP V L++ GG   ++ +   L       P +P+VV   SGRAS  +A       +  ++  ++ E  R+ L   I K +     +A  +  IL E   +++  +T++R G+    ++D  IL AL+      K  +    +   + L WN  +IA                + ++  + +  Q M +    AL    V F ++L++  + + RF T   L +LY+     G SN    ++   KKG+     R    L +  L ++ L    Y+   T+ R       L   +R    ++L +E    ++  R             LD         PF +L +WAV   + ++A   W+HGE  +AKAL+A K+    A   +++   D  I  +L  N+R F   A++LL+Q  K+  +   +L+   +  W   T ++LA  +  ++FI     + +    W  G + M     N  L   + +L  P +  + +K KD +   ++ +E+H                             + G  ++         K      G KI  F++API KFW   ++YI +LM FN++ L +++  P    ++++ YI    +E++R+I      K   K++ + +  WN  + ++I++F     L  Q    + +RS  R +Y   +    ++LL +  + + +G YV+M+ KM+ID+ YFV+I+ V+++ + VAR ++L+P E   +       L + +F +P + ++GE F D+ +   G N     G          G  +V      Y+++ ++LLVN+LIAVFN T+  V+  +++VW +Q Y L+  +  +   P P  I SH+  +  +L  + ++ +  PD
Sbjct:  285 LNSMHSHFILADNGTTGKYG--AEVKLRRQLEKHI---SLQKINTRCLPFFSLDSRLFYSFWGSCQLDSVGIGQGVPVVALIVEGGPNVISIVLEYL----RDTPPVPVVVCDGSGRASDILA----FGHKYSEEGGLINESLRDQLLVTIQKTFTYTRTQAQHLFIILME-CMKKKELITVFRMGSEGHQDIDLAILTALL------KGANASAPDQLSLALAWNRVDIARSQIF----------IYGQQWPVGSLEQAMLD----ALVLDRVDFVKLLIENGVSMHRFLTISRLEELYNT--RHGPSNTLYHLVRDVKKGNLPPDYRI--SLIDIGLVIEYLMGGAYRCNYTRKRFRTLYHNLFGPKRPKALKLLGMEDDIPLRRGRKTTKKREEEVDIDLDDPEINHFPFPFHELMVWAVLMKRQKMALFFWQHGEEAMAKALVACKLCKAMAHEASENDMVD-DISQELNHNSRDFGQLAVELLDQSYKQDEQLAMKLLTYELKNWSNATCLQLAVAAKHRDFIAHTCSQMLLTDMW-MGRLRMRK---NSGLKVILGILLPPSILSLEFKNKDDMPYMSQAQEIHLQEKEAEEPEKPTKEKEEEDMELTAMLGRNNGESSRKKDEEEVQSKHRLIPLGRKIYEFYNAPIVKFWFYTLAYIGYLMLFNYIVLVKMERWPSTQEWIVISYIFTLGIEKMREILMSEPGKLLQKVKVWLQEYWNVTDLIAILLFSVGMILRLQ---DQPFRSDGRVIYCVNIIYWYIRLLDIFGVNKYLGPYVMMIGKMMIDMMYFVIIMLVVLMSFGVARQAILFPNEEPSW------KLAKNIFYMPYWMIYGEVFADQIDPPCGQNETREDGKIIQLPPCKTGAWIVPAIMACYLLVANILLVNLLIAVFNNTFFEVKSISNQVWKFQRYQLIMTFHERPVLPPPLIIFSHMTMIFQHLCCRWRKHESDPD 1198

The following BLAST results are available for this feature:

BLAST of TCONS_00052357-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00052357-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TRPM3	1.291e-69	24.74	Transient receptor potential cation channel subfam...	[more]

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TCONS_00052357-protein (polypeptide) - C. hemisphaerica