Antp family homeodomain transcription factor protein HD01 (polypeptide) - C. hemisphaerica

Overview
NameAntp family homeodomain transcription factor protein HD01
Unique NameTCONS_00052369-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length240

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052369-protein ID=TCONS_00052369-protein|Name=Antp family homeodomain transcription factor protein HD01|organism=Clytia hemisphaerica|type=polypeptide|length=240bp
VSPGDRQHQVSVIKTSTIDYPPRPMKRANSVSSVDQHSTDSQSERSFDSR
SPPPVSPSFTHTHDAKETSRNYHDEFYRTLQSPPRRERLRVLQTEHHNQH
SSLFDGSRHEYHDIPSPNYPHTPIPSPFNHPHHPRLPEHHHHHPHFTFGP
YLDANLTLRHKFADFPDFSIKKRHRTIFTPSQLRKLEEKFIECNFIVGVD
RSALAKQLKLKEHQVKIWFQNRRTKVKQQGKEKSEIDVVS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033108XLOC_033108Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052369TCONS_00052369Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001356Homeobox_dom
IPR017970Homeobox_CS
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 171..233
e-value: 1.4E-20
score: 84.3
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 172..228
e-value: 1.1E-18
score: 66.6
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 169..229
score: 18.285
NoneNo IPR availableGENE3D1.10.10.60coord: 167..239
e-value: 4.8E-20
score: 70.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..72
NoneNo IPR availableCDDcd00086homeodomaincoord: 172..229
e-value: 2.07415E-15
score: 66.8832
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 204..227
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 171..231

Blast
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BLAST of Antp family homeodomain transcription factor protein HD01 vs. Swiss-Prot (Human)
Match: VAX1 (Ventral anterior homeobox 1 OS=Homo sapiens GN=VAX1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.203e-17
Identity = 39/70 (55.71%), Postives = 49/70 (70.00%), Query Frame = 0 
Query:  172 KRHRTIFTPSQLRKLEEKFIECNFIVGVDRSALAKQLKLKEHQVKIWFQNRRTKVKQ-QGKEKSEIDVVS 240
            KR RT FT  QL +LE +F  C ++VG +R+ LA+QL L E QVK+WFQNRRTK K+ QGK+     VVS
Sbjct:  101 KRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKDQGKDSELRSVVS 170
The following BLAST results are available for this feature:
BLAST of Antp family homeodomain transcription factor protein HD01 vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VAX15.203e-1755.71Ventral anterior homeobox 1 OS=Homo sapiens GN=VAX... [more]
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