TCONS_00052472-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052472-protein
Unique NameTCONS_00052472-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length270

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052472-protein ID=TCONS_00052472-protein|Name=TCONS_00052472-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
KFYVLQTTILSTFVINDQLYSKNVRCPVKKKTYPTTFFKMYDEDEDPNSV
PLPYELPTSYKWHQHATFYHPMMAGSIDGTDVVPHDRAIVRATRAKYKPN
KQVKGDPEKTLMVRHLPNQTKEISLRNVFSRYGDLQNCRLVRDAISGKSR
GYAFVEYKCVRDCEEALRDSGDLVIDGQKVVVDRECERTLKGWIPRRFGG
GFGGKKESGQLRFGGIERPFRRPIPVNSKPLGRQHSSTESRDGKRRFPST
SDAPRYKRTPHDDDKRSRMR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033178XLOC_033178Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052472TCONS_00052472Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 110..183
e-value: 1.6E-20
score: 84.2
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 111..177
e-value: 2.0E-13
score: 49.8
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 109..187
score: 15.801
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 101..213
NoneNo IPR availableGENE3D3.30.70.330coord: 63..211
e-value: 5.0E-22
score: 77.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 205..270

Blast
[Close]
BLAST of TCONS_00052472-protein vs. Swiss-Prot (Human)
Match: U1SBP (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Homo sapiens GN=SNRNP35 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.149e-55
Identity = 106/175 (60.57%), Postives = 123/175 (70.29%), Query Frame = 0 
Query:   62 WHQHATFYHPMMAGSIDGTDVVPHDRAIVRATRAKYKPNKQVKGDPEKTLMVRHLPNQTKEISLRNVFSRYGDLQNCRLVRDAISGKSRGYAFVEYKCVRDCEEALRDSGDLVIDGQKVVVDRECERTLKGWIPRRFGGGFGGKKESGQLRFGGIERPFRRPI--PVNSKPLGRQ 234
            W   A  Y P+ AGSIDGTD  PHDRA+ RA  A+Y PNK V GDP  TL V  L  QTKE  L+ VFSRYGD++  RLVRD ++G S+GYAF+EYK  R   +A RD+  LVID  ++ VD E ERTLKGWIPRR GGG GGKKESGQLRFGG +RPFR+PI  PV    L R+
Sbjct:    4 WMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGLVIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDLYRE 178
The following BLAST results are available for this feature:
BLAST of TCONS_00052472-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
U1SBP4.149e-5560.57U11/U12 small nuclear ribonucleoprotein 35 kDa pro... [more]
back to top